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AT4G18270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translocase 11
Curator
Summary (TAIR10)
Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development.
Computational
Description (TAIR10)
translocase 11 (TRANS11); CONTAINS InterPro DOMAIN/s: Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site (InterPro:IPR018480), Phospho-N-acetylmuramoyl-pentapeptide transferase (InterPro:IPR003524), Glycosyl transferase, family 4 (InterPro:IPR000715), Glycosyl transferase, family 4, conserved region (InterPro:IPR018481); Has 1367 Blast hits to 1365 proteins in 548 species: Archae - 16; Bacteria - 1334; Metazoa - 1; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G18270-MONOMEReggNOG:COG0472eggNOG:ENOG410INIAEMBL:AL021713EMBL:AL161548EMBL:AY130289EMBL:BX826626
EMBL:CP002687EnsemblPlants:AT4G18270EnsemblPlants:AT4G18270.1entrez:827553GeneID:827553Genevisible:O49730GO:GO:0008963
GO:GO:0016021hmmpanther:PTHR22926hmmpanther:PTHR22926:SF3HOGENOM:HOG000070893InParanoid:O49730InterPro:IPR000715InterPro:IPR003524
InterPro:IPR018480KEGG:00550+2.7.8.13KEGG:ath:AT4G18270OMA:FHNRYRAPANTHER:PTHR22926PaxDb:O49730Pfam:O49730
Pfam:PF00953PhylomeDB:O49730PIR:F85205PIR:T04929PRIDE:O49730PRO:PR:O49730PROSITE:PS01347
PROSITE:PS01348ProteinModelPortal:O49730Proteomes:UP000006548RefSeq:NP_193561.4scanprosite:PS01347scanprosite:PS01348SMR:O49730
STRING:3702.AT4G18270.1TAIR:AT4G18270tair10-symbols:ATTRANS11tair10-symbols:TRANS11TIGRfam:TIGR00445TIGRFAMs:TIGR00445TMHMM:TMhelix
UniGene:At.32925unipathway:UPA00219UniProt:O49730
Coordinates (TAIR10) chr4:-:10099364..10101897
Molecular Weight (calculated) 51722.70 Da
IEP (calculated) 9.52
GRAVY (calculated) 0.52
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MRCSLLTPTS YRFHYPNPFR SLESIPPLSN SRYRIESGSP SSFKFSAPSL QRHSSVSVKA FDDDTFDFYT GDIFAATYAI SSSEGEESDG DYALNVVTET
101: TAQKLGKFPR GRKKHRIRYG INLGLLAFLS LLLLLMDSFA WKIVRLPLPP YFLSMPFFTS AILVTLAGYI FVPLLDRLRV HEPIRTLGPV PHNRRPTIPT
201: MGGLFFVPIG VVVAIALNKV SSIEVLGAAA ATVAFAAIGL IDDSLSLYSE NNNGLSAKIQ LLLEAAVGTC FAFWLETASL SSPYGMKMLV PLPSPLGLVF
301: LGKLYLLLTS FYFVSMGNLV KATDGLDGLA GGIAALCFVA MAIAVLPICS DLSVFGASMA GACFGFLLHN RYRASVSMGD TGSLALGGAL AAMAACSGMF
401: FPLFISSGVA VLEASSVIIQ VVYYSTTKRL KGKGRRIFKT IPFHHHLRLN GLKEPMIVTM AYVISSLLSL SAAYIGLISA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)