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AT4G18230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.859
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
CAZy:GT1eggNOG:ENOG4111QSMeggNOG:KOG3339EMBL:AK228619
EMBL:BT006182EMBL:BT008518EMBL:CP002687EMBL:KJ138746
EnsemblPlants:AT4G18230EnsemblPlants:AT4G18230.1entrez:827549GeneID:827549
GO:GO:0016021GO:GO:0016740Gramene:AT4G18230.1hmmpanther:PTHR12154
hmmpanther:PTHR12154:SF4HOGENOM:HOG000182099InterPro:IPR013969KEGG:ath:AT4G18230
KO:K07441OMA:FTPRFYIPANTHER:PTHR12154Pfam:PF08660
PhylomeDB:Q84R09Proteomes:UP000006548Reactome:R-ATH-446193RefSeq:NP_193557.2
STRING:3702.AT4G18230.1TAIR:AT4G18230TMHMM:TMhelixUniGene:At.46565
UniProt:Q84R09
Coordinates (TAIR10) chr4:-:10080521..10081710
Molecular Weight (calculated) 26310.00 Da
IEP (calculated) 10.19
GRAVY (calculated) 0.42
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEGCNCVYS RMASKFSIGL LIILAIVLLM VRVLYVIYRC GKPLPKGASQ SFTTLIVLGS GGHTAEMLSL LSVLRKDRFT PRFYIAAATD NMSLQKARSF
101: EDSLAEKPAV KEASSQFMQI YRSREVGQSY VTSVWTTIVA ILHALWLMIR IRPQVILCNG PGTCIPLCVI AFLFKVLGIR WSSIFYVESV ARVKKLSLSG
201: LLLYKLRIAD QFFVQWPQLH KKYPRAHYVG CLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)