suba logo
AT4G18180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G18180-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IV97
EMBL:AL161548EMBL:CP002687EnsemblPlants:AT4G18180EnsemblPlants:AT4G18180.1
entrez:827543Gene3D:2.160.20.10GeneID:827543GO:GO:0004650
GO:GO:0005576GO:GO:0005975GO:GO:0071555Gramene:AT4G18180.1
gramene_pathway:3.2.1.15gramene_pathway:PWY-1081hmmpanther:PTHR31375hmmpanther:PTHR31375:SF11
HOGENOM:HOG000237792InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050
InterPro:IPR012334KEGG:ath:AT4G18180OMA:FGARANDPfam:PF00295
PhylomeDB:Q9M0M1PIR:E85204PROSITE:PS00502Proteomes:UP000006548
RefSeq:NP_193552.1scanprosite:PS00502SMART:SM00710SMR:Q9M0M1
STRING:3702.AT4G18180.1SUPFAM:SSF51126TAIR:AT4G18180UniGene:At.54387
UniProt:Q9M0M1
Coordinates (TAIR10) chr4:+:10065626..10067317
Molecular Weight (calculated) 44996.40 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.17
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MENFRYLKFF FFFIFVILSP SEAGNIVDKS SVFLVDVRSF GARANDHRDH TKAFVAAWDK ACKSSSSSVN LIIPRGEFSV GSLRFSGPCT NVSNLTVRVK
101: ASTDLSKYRS GGGWIQFGWI NGLTLTGGGT FDGQGALAWP FNNCTSDSNC KLLPTSLKFV GMNRTVVRRI SSVNSKFFHI ALVECRDFKG TRLNITAPSD
201: SPNTDGIHIE RSSNVYFSRS HIATGDDCVS IGQGNSQITI TSIKCGPGHG ISVGSLGRYP NEKDVNGLVV KDCKISGTTN GIRIKTWANS PGLSAATNMT
301: FENIIMNNVT NPIIIDQSYC PFSSCISNVP SKVELSEIYF KNIRGTSSSL VAVQLHCSRG MPCKKVYLEN VHLDLSSSDG GRKQSSNRGN EAVSSSCRNV
401: RANYIGTQIP PPCH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)