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AT4G18060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.972
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SH3 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SH3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Neutrophil cytosol factor 2 p67phox (InterPro:IPR000108), Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein (TAIR:AT4G34660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJS5eggNOG:ENOG410ZK1GEMBL:AF367775EMBL:AL110123EMBL:AL161547EMBL:AY125505EMBL:BT002255
EMBL:CP002687EnsemblPlants:AT4G18060EnsemblPlants:AT4G18060.1entrez:827531Gene3D:1.20.1270.60GeneID:827531Genevisible:Q8L7W0
GO:GO:0030136Gramene:AT4G18060.1hmmpanther:PTHR10663hmmpanther:PTHR10663:SF163HOGENOM:HOG000242335IntAct:Q8L7W0InterPro:IPR001452
InterPro:IPR027267iPTMnet:Q8L7W0KEGG:ath:AT4G18060ncoils:CoilOMA:QFSGTGYPaxDb:Q8L7W0Pfam:PF14604
Pfscan:PS50002PhylomeDB:Q8L7W0PIR:T14806PROSITE:PS50002ProteinModelPortal:Q8L7W0Proteomes:UP000006548RefSeq:NP_193540.3
SMART:SM00326SMR:Q8L7W0STRING:3702.AT4G18060.1SUPFAM:SSF103657SUPFAM:SSF50044TAIR:AT4G18060UniGene:At.27424
UniProt:Q8L7W0
Coordinates (TAIR10) chr4:-:10027668..10029662
Molecular Weight (calculated) 39535.90 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.57
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAFRRQASK LRDQVAKQQL AVIKQFSGTG YESSDVMVID ELEMQRHHQL DKLYRSTRSA KEFQRDIVKA AEAFTTIGLR HIEAGTKLSE DCCRYGNENS
101: QNIDENILAK AAAIYGDARK HVDKEQEDFN KLLASQVLDP LRAMVAGSPL EDARHLAQRY SRMRQEAETH ATEVSRRQAR VREAPIPENV AKLQLAEAKM
201: QELKANMAVL GKEATAALAA VESQQHRLTF QRLVAMVEGE KNYHLRIAAI LSDIEAEMVT EKQHKESAPP AIPTENGSEK TSYFLAEVIH PFSAASEKEL
301: DLDKGDYIVV RKVSQTGWAE GECKGKAGWF PMAYIEKRQR LPTTNFAAEV Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)