suba logo
AT4G17980.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 71
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 71 (NAC071); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 96 (TAIR:AT5G46590.1); Has 2972 Blast hits to 2965 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2972; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGG0eggNOG:ENOG410YB66EMBL:AL021889EMBL:AL161547EMBL:CP002687EnsemblPlants:AT4G17980EnsemblPlants:AT4G17980.1
entrez:827523GeneID:827523GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0008283GO:GO:0043565
GO:GO:0071365Gramene:AT4G17980.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF51HOGENOM:HOG000237406InterPro:IPR003441KEGG:ath:AT4G17980
OMA:PNYHFPVPfam:PF02365Pfscan:PS51005PhylomeDB:O49697PIR:T05084PROSITE:PS51005Proteomes:UP000006548
RefSeq:NP_193532.1SMR:O49697STRING:3702.AT4G17980.1SUPFAM:SSF101941TAIR:AT4G17980tair10-symbols:anac071tair10-symbols:NAC071
UniGene:At.32955UniProt:O49697
Coordinates (TAIR10) chr4:-:9978850..9980038
Molecular Weight (calculated) 30123.60 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.63
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSCLPPGF RFHPTDEELI GYYLSRKIEG LEIELEVIPV IDLYKFDPWE LPGKSFLPNR DLEWFFFCPR DKKYANGSRT NRATKAGYWK ATGKDRKITC
101: KSSHVIAGYR KTLVFYEGRA PLGDRTNWFM HEYRLCDIDD HSQKSPNFKG AFALCRVVKK NELKKNSKSL KNKNEQDIGS CYSSLATSPC RDEASQIQSF
201: KPSSTTNDSS SIWISPDFIL DSSKDYPQIK EVASECFPNY HFPVTTANHH VEFPLQEMLV RS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)