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AT4G17970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.809
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : aluminum-activated, malate transporter 12
Curator
Summary (TAIR10)
Anion transporter involved in stomatal closure. Gene has 3 splicing variants.
Computational
Description (TAIR10)
aluminum-activated, malate transporter 12 (ALMT12); CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT5G46610.1); Has 747 Blast hits to 732 proteins in 202 species: Archae - 0; Bacteria - 352; Metazoa - 0; Fungi - 13; Plants - 354; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR8VeggNOG:KOG4711EMBL:AL021889EMBL:AL161547EMBL:CP002687EnsemblPlants:AT4G17970EnsemblPlants:AT4G17970.1
entrez:827522GeneID:827522Genevisible:O49696GO:GO:0005886GO:GO:0008272GO:GO:0008509GO:GO:0009705
GO:GO:0010118GO:GO:0012505GO:GO:0015140GO:GO:0016021GO:GO:0071423GO:GO:0098656hmmpanther:PTHR31086
hmmpanther:PTHR31086:SF2HOGENOM:HOG000239344InParanoid:O49696InterPro:IPR020966KEGG:ath:AT4G17970OMA:GRIACFKPaxDb:O49696
Pfam:O49696Pfam:PF11744PhylomeDB:O49696PIR:T05083PRIDE:O49696PRO:PR:O49696Proteomes:UP000006548
RefSeq:NP_193531.1STRING:3702.AT4G17970.1TAIR:AT4G17970tair10-symbols:ALMT12tair10-symbols:ATALMT12TCDB:2.A.85.2.1TMHMM:TMhelix
UniGene:At.2053UniProt:O49696
Coordinates (TAIR10) chr4:+:9975482..9977722
Molecular Weight (calculated) 62314.00 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.13
Length 560 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNKVHVGSL EMEEGLSKTK WMVLEPSEKI KKIPKRLWNV GKEDPRRVIH ALKVGLSLTL VSLLYLMEPL FKGIGSNAIW AVMTVVVVLE FSAGATLCKG
101: LNRGLGTLIA GSLAFFIEFV ANDSGKVLRA IFIGTAVFII GAAATYIRFI PYIKKNYDYG VVIFLLTFNL ITVSSYRVDS VINIAHDRFY TIAVGCGICL
201: FMSLLVFPIW SGEDLHKTTV GKLQGLSRSI EACVDEYFEE KEKEKTDSKD RIYEGYQAVL DSKSTDETLA LYANWEPRHT LRCHRFPCQQ YVKVGAVLRQ
301: FGYTVVALHG CLQTEIQTPR SVRALFKDPC VRLAGEVCKA LTELADSISN HRHCSPEILS DHLHVALQDL NSAIKSQPKL FLGSNLHRHN NKHQNGSISN
401: NKHHQRNSSN SGKDLNGDVS LQNTETGTRK ITETGSRQGQ NGAVSLSSFR TDTSALMEYR RSFKNSNSEM SAAGERRMLR PQLSKIAVMT SLEFSEALPF
501: AAFASLLVEM VARLDNVIEE VEELGRIASF KEYDNKRDQT ADDVRCENPA NVTISVGAAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)