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AT4G17890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23266962 (2013): Golgi Golgi apparatus
  • PMID:31818904 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARF-GAP domain 8
Curator
Summary (TAIR10)
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational
Description (TAIR10)
ARF-GAP domain 8 (AGD8); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 9 (TAIR:AT5G46750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5347eggNOG:KOG0706EMBL:AF360177EMBL:AK175252
EMBL:AK176287EMBL:AK176618EMBL:AK221239EMBL:AK221371
EMBL:AK229721EMBL:AK317033EMBL:AL021889EMBL:AL161547
EMBL:BT000968EMBL:CP002687EnsemblPlants:AT4G17890EnsemblPlants:AT4G17890.1
entrez:827512GeneID:827512Genevisible:Q8H100GO:GO:0005096
GO:GO:0005829GO:GO:0046872hmmpanther:PTHR23180hmmpanther:PTHR23180:SF275
HOGENOM:HOG000162970InParanoid:Q8H100InterPro:IPR001164iPTMnet:Q8H100
KEGG:ath:AT4G17890KO:K12493OMA:FGIYICTPaxDb:Q8H100
Pfam:PF01412Pfam:Q8H100Pfscan:PS50115PhylomeDB:Q8H100
PIR:T05075PRIDE:Q8H100PRINTS:PR00405PRO:PR:Q8H100
PROSITE:PS50115ProteinModelPortal:Q8H100Proteomes:UP000006548Reactome:R-ATH-199997
RefSeq:NP_001031658.1RefSeq:NP_567543.1SMART:SM00105SMR:Q8H100
STRING:3702.AT4G17890.1SUPFAM:SSF57863TAIR:AT4G17890tair10-symbols:AGD8
UniGene:At.26724UniGene:At.66582UniProt:Q8H100
Coordinates (TAIR10) chr4:+:9937121..9939146
Molecular Weight (calculated) 44443.60 Da
IEP (calculated) 9.02
GRAVY (calculated) -0.55
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)