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AT4G17870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.
Computational
Description (TAIR10)
PYRABACTIN RESISTANCE 1 (PYR1); FUNCTIONS IN: abscisic acid binding; INVOLVED IN: abscisic acid mediated signaling pathway, regulation of protein phosphatase type 2c activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: PYR1-like 1 (TAIR:AT5G46790.1); Has 389 Blast hits to 389 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:12803DIP:DIP-53473NeggNOG:ENOG410IJIReggNOG:ENOG410YDHK
EMBL:AL021889EMBL:AL161547EMBL:AY042890EMBL:AY081526
EMBL:CP002687EnsemblPlants:AT4G17870EnsemblPlants:AT4G17870.1entrez:827510
EvolutionaryTrace:O49686Gene3D:3.30.530.20GeneID:827510Genevisible:O49686
GO:GO:0004864GO:GO:0004872GO:GO:0005634GO:GO:0005737
GO:GO:0005886GO:GO:0009738GO:GO:0010427GO:GO:0042802
GO:GO:0042803GO:GO:0043086GO:GO:0080163Gramene:AT4G17870.1
hmmpanther:PTHR31213hmmpanther:PTHR31213:SF6HOGENOM:HOG000238422InParanoid:O49686
IntAct:O49686InterPro:IPR019587InterPro:IPR023393KEGG:ath:AT4G17870
KO:K14496MINT:MINT-8299468OMA:HRFEKENPaxDb:O49686
PDB:3K3KPDB:3K90PDB:3NJOPDB:3QN1
PDB:3WG8PDB:3ZVUPDB:4WVOPDBsum:3K3K
PDBsum:3K90PDBsum:3NJOPDBsum:3QN1PDBsum:3WG8
PDBsum:3ZVUPDBsum:4WVOPfam:O49686Pfam:PF10604
PhylomeDB:O49686PIR:T05073PRIDE:O49686PRO:PR:O49686
ProteinModelPortal:O49686Proteomes:UP000006548RefSeq:NP_193521.1SMR:O49686
STRING:3702.AT4G17870.1SUPFAM:SSF55961TAIR:AT4G17870tair10-symbols:PYR1
tair10-symbols:RCAR11UniGene:At.2045UniProt:O49686
Coordinates (TAIR10) chr4:+:9928792..9929367
Molecular Weight (calculated) 21576.40 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.47
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)