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AT4G17840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ3QeggNOG:ENOG4110127EMBL:AK229659EMBL:BT026482EMBL:CP002687EnsemblPlants:AT4G17840EnsemblPlants:AT4G17840.1
entrez:827507GeneID:827507GO:GO:0016021Gramene:AT4G17840.1hmmpanther:PTHR36736hmmpanther:PTHR36736:SF1InterPro:IPR003675
KEGG:ath:AT4G17840OMA:ICHIAGIPfam:PF02517PhylomeDB:Q0WMZ7Proteomes:UP000006548RefSeq:NP_567542.1STRING:3702.AT4G17840.1
TAIR:AT4G17840TMHMM:TMhelixUniGene:At.48873UniGene:At.63702UniProt:Q0WMZ7
Coordinates (TAIR10) chr4:-:9918222..9920190
Molecular Weight (calculated) 44912.70 Da
IEP (calculated) 8.19
GRAVY (calculated) 0.08
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLPLLSCSS TRVTLSSSSS SSWCSSGSGG FRSSSKLFDS PACSRSDLKK RSGKRNSRLN GLSLEKLRSI KASSSSAGQS SSEVIDDGDA AARGLAVTSG
101: DVTSVGSFSS GEFVGAGSGG LAGPSGEVTS VGEFVGGSGG DFKDWDKIGA IVRLSYGIGI YCGMAVAGRF ICEVAGIDYT GGFNASLDTI IAGLGYASPP
201: IMALLFILDD EVVKLSPHAR AIRDVEDDEL RGFFQGMSAW QFILVVTASS VGEELFYRAA FQGALADIFL RGTDLISDSR GMVALTGLLP PFVPFAQVFA
301: ATITAALTGS LYYIAASPKD PTYIMAPVLK TRSARDELKK LFAAWYERRQ MKKIYSPLLE GLLGLYLGFE WIQTNNLLAP IITHGIYSAV VLGNGLWKLH
401: HHQQRLRLRV QKLETEGDNN SR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)