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AT4G17810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc-finger protein 10 (TAIR:AT2G37740.1); Has 1054 Blast hits to 1054 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1054; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXKUeggNOG:ENOG410YVZ2EMBL:BT010828EMBL:BT011301EMBL:CP002687EnsemblPlants:AT4G17810EnsemblPlants:AT4G17810.1
entrez:827503GeneID:827503GO:GO:0003700GO:GO:0006355GO:GO:0046872Gramene:AT4G17810.1hmmpanther:PTHR26374
hmmpanther:PTHR26374:SF167HOGENOM:HOG000092981InterPro:IPR007087InterPro:IPR015880KEGG:ath:AT4G17810OMA:ISGTTWPPfam:PF13912
Pfscan:PS50157PhylomeDB:Q6NNI6PROSITE:PS00028PROSITE:PS50157Proteomes:UP000006548RefSeq:NP_193516.2scanprosite:PS00028
SMART:SM00355SMR:Q6NNI6STRING:3702.AT4G17810.1SUPFAM:SSF57667TAIR:AT4G17810UniGene:At.32965UniProt:Q6NNI6
Coordinates (TAIR10) chr4:+:9906918..9907532
Molecular Weight (calculated) 22281.90 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.57
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGGAWMWNP NKIEELEDDD ESWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA LGGHMNVHRR DRASSRAHQG STVAAAARSG HGGMLLNSCA
101: PPLPTTTLII QSTASNIEGL SHFYQLQNPS GIFGNSGDMV NLYGTTSFPP SNLPFSMLNS PVEVPPRLIE YSTGDDESIG SMKEATGTSV DELDLELRLG
201: HHPP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)