suba logo
AT4G17710.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeodomain GLABROUS 4
Curator
Summary (TAIR10)
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.
Computational
Description (TAIR10)
homeodomain GLABROUS 4 (HDG4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-7 (TAIR:AT5G46880.1); Has 10210 Blast hits to 10152 proteins in 479 species: Archae - 0; Bacteria - 4; Metazoa - 7535; Fungi - 255; Plants - 2198; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
Protein Annotations
BioGrid:12785eggNOG:ENOG410JXFReggNOG:ENOG411040JEMBL:AL161547EMBL:AY133700EMBL:CP002687EMBL:Z97344
EnsemblPlants:AT4G17710EnsemblPlants:AT4G17710.1entrez:827492Gene3D:1.10.10.60GeneID:827492Genevisible:Q8L7H4GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0008289GO:GO:0043565Gramene:AT4G17710.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF267
HOGENOM:HOG000243256InParanoid:Q8L7H4IntAct:Q8L7H4InterPro:IPR001356InterPro:IPR002913InterPro:IPR009057InterPro:IPR017970
KEGG:ath:AT4G17710KO:K09338ncoils:CoilOMA:MASLMATPaxDb:Q8L7H4Pfam:PF00046Pfam:PF01852
Pfam:Q8L7H4Pfscan:PS50071Pfscan:PS50848PhylomeDB:Q8L7H4PIR:B71447PRIDE:Q8L7H4PRO:PR:Q8L7H4
PROSITE:PS00027PROSITE:PS50071PROSITE:PS50848ProteinModelPortal:Q8L7H4Proteomes:UP000006548RefSeq:NP_193506.2scanprosite:PS00027
SMART:SM00234SMART:SM00389SMR:Q8L7H4STRING:3702.AT4G17710.1SUPFAM:SSF46689SUPFAM:SSF55961TAIR:AT4G17710
tair10-symbols:HDG4UniGene:At.32974UniProt:Q8L7H4
Coordinates (TAIR10) chr4:-:9856327..9859288
Molecular Weight (calculated) 79281.70 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.35
Length 709 amino acids
Sequence (TAIR10)
(BLAST)
001: METKDKKEKG HMVLNSDNVF GSVSSSPTTT IQNPNYFTSF ENPNFPYIFP KEEYEVMSKI ESGSGKSTGS GHDPVENTAI EQEPPAAKKK RYHRHTASQI
101: QQMEALFKEN AHPDTKTRLR LSKKLGLSPI QVKFWFQNKR TQIKAQQSRS DNAKLKAENE TLKTESQNIQ SNFQCLFCST CGHNLRLENA RLRQELDRLR
201: SIVSMRNPSP SQEITPETNK NNNDNMLIAE EEKAIDMELA VSCARELAKM CDINEPLWNK KRLDNESVCL NEEEYKKMFL WPLMNDDDRF RREASRANAV
301: IMLNCITLVK AFLDADKWSE MFFPIVSSAK TAQIISSGAS GPSGTLLLMF AELQVVSPLV PTREAYFLRY VEQNAEEGKW MVVDFPIDRI KPASATTTDQ
401: YRRKPSGCII QAMRNGYSQV TWVEHVEVEE KHVQDEVVRE FVESGVAFGA ERWLSVLKRQ CERMASLMAT NITDLGVIPS VEARKNLMKL SQRMVKTFCL
501: NIINSHGQAP TKDTVKIVSR KVCGGLVPCA VSVTLLPYSH QQVFDLLRDN QRLSQLEILF MGSSFQEVAH IANGSHLGNS ISLLRINVES NSSHNVELML
601: QETCTDNSGS LLVYSTVDPV AVQLAMNGED PSEIPLLPVG FSVVPVNPSD GVEGSSVSSP SCLLTVAIQV LGSNVTTERL DLSTVSVINH RICATVNRIT
701: SALVNDVGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)