suba logo
AT4G17695.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
KANADI 3 (KAN3); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G32240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTK2eggNOG:ENOG41107S4EMBL:AL161547EMBL:AY048690
EMBL:CP002687EMBL:Z97344EnsemblPlants:AT4G17695EnsemblPlants:AT4G17695.1
entrez:827490Gene3D:1.10.10.60GeneID:827490Genevisible:Q941I2
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0007275GO:GO:0030154Gramene:AT4G17695.1
hmmpanther:PTHR31496hmmpanther:PTHR31496:SF10HOGENOM:HOG000241649InterPro:IPR001005
InterPro:IPR006447InterPro:IPR009057KEGG:ath:AT4G17695ncoils:Coil
OMA:LDHYYYSPaxDb:Q941I2Pfam:PF00249Pfam:Q941I2
PhylomeDB:Q941I2PRIDE:Q941I2PRO:PR:Q941I2ProteinModelPortal:Q941I2
Proteomes:UP000006548RefSeq:NP_567535.1SMR:Q941I2STRING:3702.AT4G17695.1
SUPFAM:SSF46689TAIR:AT4G17695tair10-symbols:KAN3TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.26411UniProt:Q941I2
Coordinates (TAIR10) chr4:-:9848134..9850698
Molecular Weight (calculated) 36924.90 Da
IEP (calculated) 8.81
GRAVY (calculated) -0.99
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MELFPSQPDL YLKISRRREE EQEKESQELQ EQEVERRLGF QSKASDLDNK SSNNLIHTLQ FTSNNEATKI NSNQEHKESL DQDLRSIFMM RPIRGIPLYQ
101: NQVLDHYYYS STSPNPFFFS EVNGQHASRR LITNPNCSFN LHNRHRRQAQ PQPPRFTAKR GVRAPRMRWT TTLHAHFVHA VQLLGGHERA TPKSVLELMD
201: VQDLTLAHVK SHLQMYRTIK STEKPTTSSG QSDCENGSQV NSEREARNLT GLWNNSSSEA RFQLKAKASS GVDISSNENE WKNRRCPSNE RLSSDSSSLT
301: GTRPETETPN LDFTLATPNL SP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)