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AT4G17680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SBP (S-ribonuclease binding protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT5G47050.1); Has 422 Blast hits to 421 proteins in 63 species: Archae - 0; Bacteria - 11; Metazoa - 35; Fungi - 13; Plants - 325; Viruses - 3; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111S1XeggNOG:KOG1100EMBL:AY133711EMBL:CP002687EnsemblPlants:AT4G17680EnsemblPlants:AT4G17680.1entrez:827488
ExpressionAtlas:Q8L7G9Gene3D:3.30.40.10GeneID:827488GO:GO:0004842GO:GO:0005634GO:GO:0008270GO:GO:0031347
Gramene:AT4G17680.1hmmpanther:PTHR10044hmmpanther:PTHR10044:SF131HOGENOM:HOG000239367IntAct:Q8L7G9InterPro:IPR001841InterPro:IPR013083
InterPro:IPR017066KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-ncoils:CoilOMA:RHHNRALPfam:PF13920
Pfscan:PS50089PhylomeDB:Q8L7G9PIRSF:PIRSF036836PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_193503.2SMR:Q8L7G9
STRING:3702.AT4G17680.1SUPFAM:SSF57850TAIR:AT4G17680UniGene:At.32978unipathway:UPA00144UniProt:Q8L7G9
Coordinates (TAIR10) chr4:-:9842903..9844095
Molecular Weight (calculated) 35133.60 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.52
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)