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AT4G17650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase / dehydrase and lipid transport protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase / dehydrase and lipid transport protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); Has 2562 Blast hits to 2558 proteins in 1000 species: Archae - 0; Bacteria - 1601; Metazoa - 177; Fungi - 106; Plants - 52; Viruses - 1; Other Eukaryotes - 625 (source: NCBI BLink).
Protein Annotations
DNASU:827485eggNOG:COG2867eggNOG:KOG3177EMBL:CP002687EnsemblPlants:AT4G17650EnsemblPlants:AT4G17650.1entrez:827485
Gene3D:3.30.530.20GeneID:827485Gramene:AT4G17650.1hmmpanther:PTHR12901hmmpanther:PTHR12901:SF10InParanoid:F4JP95InterPro:IPR005031
InterPro:IPR023393KEGG:ath:AT4G17650KO:K18588OMA:WCQRSEIPaxDb:F4JP95Pfam:PF03364PRIDE:F4JP95
ProteinModelPortal:F4JP95Proteomes:UP000006548RefSeq:NP_193500.1SMR:F4JP95STRING:3702.AT4G17650.1SUPFAM:SSF55961TAIR:AT4G17650
UniGene:At.26218UniProt:F4JP95
Coordinates (TAIR10) chr4:+:9827749..9829443
Molecular Weight (calculated) 29035.60 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.28
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPFMSGLRA VSSLLSCRNA ISRKLVSRSG IPRGSFVSDQ IRRFGSLSGV ERCSSNWLMS NDDARVSFRR LPGSVSLLQR RHFLGCGDGE EGGGELSKIY
101: EERRVLGYTP EQMFNVVAAV DLYHGFVPWC QRSEVLKEYP DGSFDAELEI GFKFLVESYI SHVESERPKW IKTTARDTGL FDHLINLWQF KPGPIPGTCD
201: LHFHVDFKFN SPLYRQVASM FFKEVASRLV GAFSDRCRLV YGPGVRVDEN AYEQRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)