AT4G17610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.974 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNA/rRNA methyltransferase (SpoU) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 6630 Blast hits to 6614 proteins in 1865 species: Archae - 7; Bacteria - 4787; Metazoa - 103; Fungi - 50; Plants - 109; Viruses - 0; Other Eukaryotes - 1574 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9805652..9814910 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 207940.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||
| Length | 1850 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGSSVITSLS LSFKQVPPAA IPAFLDCVLS STGVSPSTLF ESLIEQFPFR LEDTVNGDKR FDSDDCNHIA SLVAGLCHLL KNFGFVAADN HNALQLFVWR 0101: VFIPLMKMVR AYDLDMLNKI VESFFDVVIE TNVLDMLGVS LVPFLLRSVG FSMGMRQHEE SDFIKWGDLC LRDSLNTIDM DENYIAQLSG SFPIPLSCHL 0201: LNLILNAAFQ SHQAAPKVES FAAGMLWDLC NTTERLLSQS VEHRSCAVSF LLPAIFKAFS SQSSLKISHQ GNLFILSRNG FIKRIWECCK KLFSVGSIER 0301: RDAYSVLSLC LSSGSWTDGT ESFVSEKDAV QFDLRSEQEF WDEIKIGLVV DESLVRKQSL HILKSVLSII EVSETISEKK PEGNSVNRSM TRKETWAEKE 0401: AKSLGVGELY GSVDSGLTSQ QGWQAFLLLY EMLEEYGTHL VEAAWSNQID LLIKSSLRYD GTLKSDCNNS HHGHMETPDE EAKIFNWLEV LWNRGFRHDN 0501: PLVRCTVMES FFGIEWRRYK TCTQSMSQTF VLGPFIEGLN DPTHHKDFGL KGIYTSRTIE GAAQYVSAYT SCLNPRNRVG FLINLASLAK KQSFCRAGFM 0601: ALVQCIVSTA YVVGGYGDKE MGHLEDKFSG TAQESSCGHL SQDDMTHILD VLKFVAESSR QHFNHKYRIR ASLTILNTLK FLLLIVLFHF LVYQKVLETA 0701: ASVVNPCNVP LGTLLQFVSA IPREFTDHDG LLRKMMLEWL QGCNRKTSNS LCTDGTRLLA SLYEYLKGFT SDNVESFDDE DLEAWDSQTK RWARVFFLMI 0801: NKEEHLTDII MFVQNNGLSF FQEKNHLKRA PAKFLIFILS MLLELQNMQD GISELSSSVK SKSGIGSDEQ TGKQIVVDAS SIKKKFAVVL LSILKELIPF 0901: ADSSCSIFWS HTTVENGALP GSVIGKLGGP SQRRLSVPTT TAVLEAVLSV KTIGLISSYC AQFTSGVGEL KLALAFFWKF TQHTISSQIC NSEAAAEIYL 1001: AAFEALASVL NAFVSLCSAG AFNLLENDST LLSMVDGEFW LQVSVPAFVR NINHLLTAGV LVRSRRAVLL SWKWLCVESL LSVMHILDAR RIPEDRKSFF 1101: SDDTVKSIFQ DIVESLENAG EGSALPMLKS VRLALGILAS GKSSLDGFSG VDTQTMWQLV KSCWILHISC KKRRVAPIAA LLSSVLHSSL FSNKDMHITE 1201: DEHGPLKWFV EKVLEEGQKS PRTIRLAALH LSGLWLMYPR TIKYYIKELR LLTLYGSVAF DEDFEAELSD NNDARTEVSL LAKSPDPELT ELFINTELYA 1301: RVSVAGLFQK LANLAYMVEP ASQNQDCQDA LVAGKLFLLE LLDAAVHDKD LAKELYKKYS AIHRRKIRAW QMICIMSRFV CNDIVGQVMD SVHICLHVSL 1401: QEQTERNNLP AVRQYLETFA INIYLKFPAL VKEQLVPILK NYDSKAQVNL RKTKMIVFAN VILHAEKIAQ QTHLRELLPP ILPLLTSHHH SLRGFAQLLV 1501: HRVLFRLFPP VESTSSHTIS LEKLSFENLK SYLDKNPDCS RLRASMEGFL DAYDPSTSAT PAGVFVNRVE ESEFECVPTC LMDNVLSFLN DVREDLRASM 1601: AKDVVTIKNE GFKIDEEPKR RLIMSTTDEE RLSEPSSLDF QRKITLSKHE KQDASSTSVL RNGETYKRLF EMEKEDELVT QLLRSRSMEV ERLKSGRQSL 1701: ILVASLVDRI PNLAGLARTC EVFKASSLAV ADASIIHDKQ FQLISVTAEK WVPIMEVPVN SLKLFLEKKK REGFSILGLE QTANSVSLDK YQFPKKTVLV 1801: LGREKEGIPV DIIHILDACI EIPQLGVVRS LNVHVSGAIA LWEYTRQQRI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)