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AT4G17600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chlorophyll A-B binding family protein
Curator
Summary (TAIR10)
Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1.
Computational
Description (TAIR10)
LIL3:1; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT5G47110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DIP:DIP-59382NeggNOG:ENOG410IVH1eggNOG:ENOG4111GIBEMBL:AF134133EMBL:AF375427EMBL:AY074821EMBL:AY136323
EMBL:BT000402EMBL:BT000425EMBL:BT002185EMBL:CP002687EnsemblPlants:AT4G17600EnsemblPlants:AT4G17600.1entrez:827479
GeneID:827479GO:GO:0003700GO:GO:0006355GO:GO:0009507GO:GO:0009535GO:GO:0019899GO:GO:0042651
GO:GO:0042802GO:GO:0043495GO:GO:1902326GO:GO:1904964GO:GO:1904966Gramene:AT4G17600.1hmmpanther:PTHR14154
hmmpanther:PTHR14154:SF14InterPro:IPR022796InterPro:IPR023329KEGG:ath:AT4G17600OMA:ARWINGTPfam:PF00504PIR:T52310
Proteomes:UP000006548RefSeq:NP_567532.1STRING:3702.AT4G17600.1SUPFAM:0043399SUPFAM:SSF103511TAIR:AT4G17600tair10-symbols:LIL3:1
UniGene:At.23577UniProt:Q9SYX1
Coordinates (TAIR10) chr4:+:9803759..9804714
Molecular Weight (calculated) 29404.70 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.33
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MALFSPPISS SSLQNPNFIP KFSFSLLSSN RFSLLSVTRA SSDSGSTSPT AAVSVEAPEP VEVIVKEPPQ STPAVKKEET ATAKNVAVEG EEMKTTESVV
101: KFQDARWING TWDLKQFEKD GKTDWDSVIV AEAKRRKWLE ENPETTSNDE PVLFDTSIIP WWAWIKRYHL PEAELLNGRA AMIGFFMAYF VDSLTGVGLV
201: DQMGNFFCKT LLFVAVAGVL FIRKNEDVDK LKNLFDETTL YDKQWQAAWK NDDDESLGSK KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)