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AT4G17550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 3 (TAIR:AT3G47420.1); Has 16541 Blast hits to 16470 proteins in 1914 species: Archae - 148; Bacteria - 14105; Metazoa - 649; Fungi - 878; Plants - 215; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).
Protein Annotations
BRENDA:3.6.3.20eggNOG:COG2271eggNOG:ENOG410IP3ZEMBL:AL161546EMBL:CP002687EMBL:Z97343EnsemblPlants:AT4G17550
EnsemblPlants:AT4G17550.1entrez:827470GeneID:827470Genevisible:O23596GO:GO:0005774GO:GO:0006820GO:GO:0008643
GO:GO:0016021GO:GO:0022857GO:GO:0055062GO:GO:0055085Gramene:AT4G17550.1hmmpanther:PTHR11662hmmpanther:PTHR11662:SF232
HOGENOM:HOG000230522InParanoid:O23596InterPro:IPR000849InterPro:IPR011701InterPro:IPR020846KEGG:ath:AT4G17550KO:K13783
OMA:AMGVICFPaxDb:O23596Pfam:O23596Pfam:PF07690Pfscan:PS50850PhylomeDB:O23596PIR:B71445
PIRSF:PIRSF002808PRIDE:O23596PRO:PR:O23596PROSITE:PS50850ProteinModelPortal:O23596Proteomes:UP000006548RefSeq:NP_193488.2
SMR:O23596STRING:3702.AT4G17550.1SUPFAM:SSF103473TAIR:AT4G17550TMHMM:TMhelixUniGene:At.32989UniGene:At.48872
UniProt:O23596
Coordinates (TAIR10) chr4:-:9777938..9779738
Molecular Weight (calculated) 59078.80 Da
IEP (calculated) 7.52
GRAVY (calculated) 0.29
Length 544 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMNSKRKTP PGIALLRRVR GRNWSPKTFR YAILFITFIA YACYHASRKP SSIVKSVLHP DSSTKPPQEH NSDKIYPWPM GNVFVKREIG DIDEVLLHRK
101: SKGWEPFNGK DGTSRLGEID VAFLACYSIG MYVAGHLGDS LDLRLFLTWG MIGSGFFVGL FGMGYFWNIH AFWFFLVMQM AAGLFQATGW PSVVAVVGNW
201: FGKRKRGLIM GIWNAHTSVG NICGSLIAAG VLEYGWGWSF IAPGFVMSLG GVLVYLFLAA YPEDVGFPDI NSNSGKFIKR KRDVEEEEEE VEEDLGTDVE
301: GDGEGSSGSG SGYENKRSVG LLQACMIPGV IPFALCLFFS KLVAYTFLYW LPFYLSQTTI GGEYVSVKTA GNLSTLFDVG GIVGGILCGY ISDKFKARAT
401: TAAAFMYAAI PAMLVYHSYG GVSQTVNILL MMVAGLFVNG PYALITTAVS ADLGTHKSLQ GDSRALATVT AIIDGTGSAG AALGPLLTGF LSTLGWQAVF
501: YMLVVGALCA GLLLTRLVIA EIREKLGYVD EEVPASEPLL TDRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)