AT4G17505.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein of Unknown Function (DUF239) | ||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G35250.1); Has 665 Blast hits to 642 proteins in 27 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 10; Plants - 644; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:9764376..9766315 | ||||||||||||||||||||
Molecular Weight (calculated) | 36203.20 Da | ||||||||||||||||||||
IEP (calculated) | 9.19 | ||||||||||||||||||||
GRAVY (calculated) | -0.37 | ||||||||||||||||||||
Length | 322 amino acids | ||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MHLQNSMILS LFFFFYLVAT THAKDDQFFE CVDFYKQPSL QHPLLKHHKL QIMSSPRRST ICPRGMVPIQ KFRNNANNLN AQVAVNHATL DTKFASEKYH 101: GASAVLSIHN PTFSGKATRS NIWIEKGAPQ GLNCIIFGWA IEPKFYGDNK THFTTYWSND GFYKTGCYNT VCKGFIQHFS DLYPGKPFDQ VSTYGGRQVA 201: ANLSIIRDGP TGNWMLMNSG ALVGYWPKEL FSHLGLGADT IRYGGLTVGG APMGNGKFPD KGNDLSKSSY FKDMKYVDAN FKNNPISELE MIVDTPKPYC 301: FRLNYLKDQQ TITYGGPGPC PY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)