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AT4G17505.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of Unknown Function (DUF239)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G35250.1); Has 665 Blast hits to 642 proteins in 27 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 10; Plants - 644; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G17505EnsemblPlants:AT4G17505.1entrez:827465
GeneID:827465Gramene:AT4G17505.1hmmpanther:PTHR31589hmmpanther:PTHR31589:SF17
InParanoid:F4JP70InterPro:IPR004314KEGG:ath:AT4G17505PaxDb:F4JP70
Pfam:PF03080PRIDE:F4JP70Proteomes:UP000006548RefSeq:NP_193483.1
TAIR:AT4G17505UniGene:At.54374UniProt:F4JP70
Coordinates (TAIR10) chr4:-:9764376..9766315
Molecular Weight (calculated) 36203.20 Da
IEP (calculated) 9.19
GRAVY (calculated) -0.37
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MHLQNSMILS LFFFFYLVAT THAKDDQFFE CVDFYKQPSL QHPLLKHHKL QIMSSPRRST ICPRGMVPIQ KFRNNANNLN AQVAVNHATL DTKFASEKYH
101: GASAVLSIHN PTFSGKATRS NIWIEKGAPQ GLNCIIFGWA IEPKFYGDNK THFTTYWSND GFYKTGCYNT VCKGFIQHFS DLYPGKPFDQ VSTYGGRQVA
201: ANLSIIRDGP TGNWMLMNSG ALVGYWPKEL FSHLGLGADT IRYGGLTVGG APMGNGKFPD KGNDLSKSSY FKDMKYVDAN FKNNPISELE MIVDTPKPYC
301: FRLNYLKDQQ TITYGGPGPC PY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)