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AT4G17486.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.525
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PPPDE putative thiol peptidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G47310.1); Has 845 Blast hits to 845 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 76; Plants - 355; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).
Protein Annotations
BioGrid:12755EC:3.4.-.-eggNOG:ENOG4111H3ZeggNOG:KOG0324EMBL:AF324997EMBL:AF367279EMBL:AL161546
EMBL:AY055104EMBL:CP002687EMBL:Z97343EnsemblPlants:AT4G17486EnsemblPlants:AT4G17486.1entrez:827462ExpressionAtlas:Q93VG8
GeneID:827462Genevisible:Q93VG8GO:GO:0008233hmmpanther:PTHR12378hmmpanther:PTHR12378:SF19HOGENOM:HOG000241907IntAct:Q93VG8
InterPro:IPR008580KEGG:00261+3.4.-.-KEGG:00310+3.4.-.-KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-MEROPS:C97.A05OMA:YMEHISG
PaxDb:Q93VG8Pfam:PF05903Pfam:Q93VG8PhylomeDB:Q93VG8PIR:E71444PRO:PR:Q93VG8ProteinModelPortal:Q93VG8
Proteomes:UP000006548RefSeq:NP_567528.2SMART:SM01179SMR:Q93VG8STRING:3702.AT4G17486.1TAIR:AT4G17486UniGene:At.27036
UniProt:Q93VG8
Coordinates (TAIR10) chr4:-:9749992..9751201
Molecular Weight (calculated) 25350.60 Da
IEP (calculated) 4.60
GRAVY (calculated) -0.39
Length 224 amino acids
Sequence (TAIR10)
(BLAST)
001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)