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AT4G17330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : G2484-1 protein
Curator
Summary (TAIR10)
gene of unknown function expressed in seedlings, flower buds and stems
Computational
Description (TAIR10)
G2484-1 protein (G2484-1); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 6169 Blast hits to 4010 proteins in 631 species: Archae - 30; Bacteria - 1624; Metazoa - 1931; Fungi - 976; Plants - 400; Viruses - 26; Other Eukaryotes - 1182 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQ9ZeggNOG:ENOG410YJ5AEMBL:CP002687EnsemblPlants:AT4G17330EnsemblPlants:AT4G17330.1entrez:827445GeneID:827445
GO:GO:0009506Gramene:AT4G17330.1hmmpanther:PTHR31917hmmpanther:PTHR31917:SF7InParanoid:F4JP43InterPro:IPR008395InterPro:IPR014002
iPTMnet:F4JP43KEGG:ath:AT4G17330OMA:QRGTHLDPaxDb:F4JP43Pfam:PF05641PRIDE:F4JP43ProteinModelPortal:F4JP43
Proteomes:UP000006548RefSeq:NP_193464.5SMART:SM00743STRING:3702.AT4G17330.1TAIR:AT4G17330tair10-symbols:ATG2484-1tair10-symbols:G2484-1
UniGene:At.23026UniProt:F4JP43
Coordinates (TAIR10) chr4:-:9689263..9697172
Molecular Weight (calculated) 218082.00 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.57
Length 2037 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDYDDSDFQN QNLHLAGEAN NKFPPVLQPY ALPKFDFDDT LNTHLRFDSL GESEAFLGIE GNEDNNWIED FSRGSSGIVF SSGATESCAI SRHNNVWSEA
0101: TSSESVAMLL NSVGQDEVIV REDTIKKSDT SHELGCTMET VEPGQTSHER SLSKEETVNL QPNPSVDDTP GESSVVKTDD GQEQVLVKDD SPTAVEEASV
0201: EEKNSILTSN TATVEAIDTT DLGKIGTETT DNLLDQTEEK ANVESRMEDD CSDGNVQTII TCSGELNNQS TLLPETSNDE NVISDHIQSS YNRNDLTADA
0301: RSILVEGHSD SHIDSASEVE KVEAENIGKT AKPDLKEIEL SDVTVLERGD QAPSTLEVGG QDVSGTECQD LLVSTVHTSV AVEASLELAG ELTTITNSVS
0401: IEKPELLSHQ HMEVITSEHE STFQIETETY PQIHVFETSE SVYISTMDSM VEAREGGVSK KSDNEGSART SNLEQSMELP VNANDRDQDV KNSQILSESV
0501: VSGSVGYVSG GSTSELAESE SQSDSIPTDK SETMIDSSLN LEELQPLSQD GAPAVSLTSS IDLHMVKTSS DDSDQGSYSE TKKVYGEPEN GQTVPPVDAS
0601: CSGSQMDQEA RKRAEGTKQS TYSVEGCPRS EGSKDAVDAD GVGQVLQQQS EELIFEENVV TEAVKAPETL SVLDKDNKNE MPITSSLPIL GSEAGKDGQE
0701: EDNTAASGGI MAAGTPVTHP KGDAIVLGDS RASTCSESSV KSYVTAIEDA ATNLKTPLDS FPTVKTSELQ FNNTETNSVK KPEDQNISGF MSAGSPVLNR
0801: NETSSSEMNL TPDQLKAGKI SKAVIFSQAT LVSPIVVGSP STSSLDKTAA KSSKAKSERK PRRTSKSVGK ETSRKGTSVK GATPIEQFQS GGKTNAVNQS
0901: LASHIQITQS TEKQRSLQSP ALKAFGSLST PTASLPDLNS SALSSILRRP FTDLQQVQLR AQIFVYGALI QGTAPDEAYM ISAFGGADGG KGSWEKSWRT
1001: CVVRAQKSLV ATPETPLQSR PGKTETPSAG HTNSKESSGT NPMIPLSSPL WSLSTSVDTL QSSSVQRGSA ATHQPLLSAS HAHQTPPTQN IVGHNTPWMS
1101: PLPFRNAWLA SQQTSGFDVG SRFPVYPITD PVKLTPMKES SMTLSGAKHV QSGTSSNVSK VTPTLEPTST VVAPAQHSTR VKSRKRKKMP VSVESGPNIL
1201: NSLKQTELAA SPLVPFTPTP ANLGYNAGTL PSVVSMTAVP MDLVSTFPGK KIKSSFPSPI FGGNLVREVK QRSVLSEDTI EKLKEAKMHA EDASALATAA
1301: VSHSEYVWKQ IEQQSHAGLQ PETQDRLASA AVAIAAAAAV AKAAAAAANV AANAALQAKL MAEEASLPNA SDQGLPKSYD SILPGQGTPA SILKGEGAVV
1401: NSSSVLIAAR EASKKRVEAA TAATKRAENM DSIVKAAELA SEAVSQAGIL VSMGHPPLLN KLVEAGPSNY WRQAQESQEV QPCKTVVLEK ETVSTSEGTF
1501: AGPKIVQTEF GGSVNTADGV SGPVPATGKL KGQEGDKYAD LAKNNDVVFE PEVGSKFSID AQQTIKATKN EDIKEGSNVE VFKEEPGLRT AWYSANVLSL
1601: EDDKAYVLFS DLSVEQGTDK LKEWVALKGE GDQAPKIRPA RSVTALPYEG TRKRRRAALG DHIWKIGDRV DSWVHDSWLE GVITEKNKKD ENTVTVHFPA
1701: EEETLTIKAW NLRPSLVWKD GKWIECSSSG ETISSSHEGD TPKEKRPRLG TPALVAEVKD TSMKIVDDPD LGKPPQTGVL NLGVSENTFN IGKSTREENK
1801: PDPLRMKRTG LQKQGSKVIF GVPKPGKKRK FMDVSKHYVS EASTKTQERK EPVKPVRSIV PQNSGIGSWK MPSKTISIEK QTTISRPKTF KPAPKPKEKP
1901: GATARIIPRK DSRNTTASDM ESDESAENRG PGSGVSFKGT VEEQTTSSSH DTGSKNSSSL STNKGRVAPT AGRLAKIEED KALAENSSKT SEGMEPRRSI
2001: RRIQPTSRLL EGLQTSMMTS KIPSVSHSKS HLSQSKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)