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AT4G17240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKCEeggNOG:ENOG410YHCZEMBL:CP002687EnsemblPlants:AT4G17240
EnsemblPlants:AT4G17240.1entrez:827436ExpressionAtlas:F4JNF8GeneID:827436
Gramene:AT4G17240.1hmmpanther:PTHR35493hmmpanther:PTHR35493:SF1InParanoid:F4JNF8
ncoils:CoilOMA:SEESKGWPaxDb:F4JNF8ProteinModelPortal:F4JNF8
Proteomes:UP000006548RefSeq:NP_193457.5TAIR:AT4G17240UniGene:At.45808
UniProt:F4JNF8
Coordinates (TAIR10) chr4:-:9666799..9668292
Molecular Weight (calculated) 38404.80 Da
IEP (calculated) 10.13
GRAVY (calculated) -0.81
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)