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AT4G17220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.978
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : microtubule-associated proteins 70-5
Curator
Summary (TAIR10)
Encodes a microtubule associated protein (MAP70-5). Regulates secondary wall patterning in wood cells. Expressed in all tissues.
Computational
Description (TAIR10)
microtubule-associated proteins 70-5 (MAP70-5); CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-2 (TAIR:AT1G24764.1); Has 55887 Blast hits to 31940 proteins in 2062 species: Archae - 816; Bacteria - 7000; Metazoa - 28657; Fungi - 4455; Plants - 2969; Viruses - 117; Other Eukaryotes - 11873 (source: NCBI BLink).
Protein Annotations
BioGrid:12727eggNOG:ENOG410IKF4eggNOG:ENOG41113GCEMBL:AK117336EMBL:AL161546EMBL:AM086442EMBL:BT005901
EMBL:CP002687EMBL:Z97343EnsemblPlants:AT4G17220EnsemblPlants:AT4G17220.1entrez:827434GeneID:827434Genevisible:Q8GYX3
GO:GO:0005737GO:GO:0005874GO:GO:0007010GO:GO:0008017GO:GO:0009832GO:GO:0010051GO:GO:0071555
Gramene:AT4G17220.1hmmpanther:PTHR31246hmmpanther:PTHR31246:SF5HOGENOM:HOG000005796InParanoid:Q8GYX3IntAct:Q8GYX3InterPro:IPR009768
KEGG:ath:AT4G17220ncoils:CoilOMA:RRVYTHQPANTHER:PTHR31246PaxDb:Q8GYX3Pfam:PF07058Pfam:Q8GYX3
PhylomeDB:Q8GYX3PIR:B71441PRIDE:Q8GYX3PRO:PR:Q8GYX3ProteinModelPortal:Q8GYX3Proteomes:UP000006548RefSeq:NP_193455.2
SMR:Q8GYX3STRING:3702.AT4G17220.1TAIR:AT4G17220tair10-symbols:ATMAP70-5tair10-symbols:MAP70-5UniGene:At.33010UniProt:Q8GYX3
Coordinates (TAIR10) chr4:-:9657008..9659405
Molecular Weight (calculated) 58524.80 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.84
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MTAAENPFVS DTSSLQSQLK EKEKELLAAK AEVEALRTNE ELKDRVFKEL RENVRKLEEK LGATENQVDQ KELERKKLEE EKEDALAAQD AAEEALRRVY
101: THQQDDDSLP LESIIAPLES QIKIHKHEIS ALQEDKKALE RLTKSKESAL LEAERILRSA LERALIVEEV QNHNFELRRQ IEICQDENKF LEKINRQKVL
201: EIEKLSQSIV ELEEAILAGG TAANAVRDYR RQISQLNDEK RTLERELARV KVSASRVALA VANEWKDEND RVMPVKQWLE ERRILHGEMQ KLKDKLAVSE
301: RTAKAESQLK ERLKLRLKTI EDGLKGPNTF FVSPTTKTEK SGKILGFLTS GGGSKKRSSS QLRGSVTGRI HAMNQPIDRV GESDEMENSK ITANGLTDQH
401: EEDSERKTEE DGNVYSEDMV SGFLYDRLQK EVIALRKLCE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALAML NEESKLCRKA
501: KLPRSRIPNP RCQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)