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AT4G17170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GTPase homolog B1C
Curator
Summary (TAIR10)
member of RAB gene family
Computational
Description (TAIR10)
RAB GTPase homolog B1C (RABB1C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ER to Golgi vesicle-mediated transport, pollen sperm cell differentiation, cell growth; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: GTP-binding 2 (TAIR:AT4G35860.1); Has 27116 Blast hits to 27043 proteins in 734 species: Archae - 17; Bacteria - 131; Metazoa - 14131; Fungi - 4055; Plants - 2966; Viruses - 20; Other Eukaryotes - 5796 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G17170-MONOMERBioGrid:12721eggNOG:COG1100eggNOG:KOG0098EMBL:AL161545EMBL:BT002513EMBL:BT006251
EMBL:CP002687EMBL:Y09314EMBL:Z97343EnsemblPlants:AT4G17170EnsemblPlants:AT4G17170.1entrez:827428Gene3D:3.40.50.300
GeneID:827428Genevisible:P92963GO:GO:0005525GO:GO:0005773GO:GO:0005886GO:GO:0006888GO:GO:0007264
GO:GO:0015031GO:GO:0016020Gramene:AT4G17170.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF545HOGENOM:HOG000233968InParanoid:P92963
IntAct:P92963InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT4G17170KO:K07877OMA:EAYINTA
PaxDb:P92963Pfam:P92963Pfam:PF00071Pfscan:PS51419PhylomeDB:P92963PIR:E71440PIR:H85191
PRIDE:P92963PRO:PR:P92963PROSITE:PS51419ProteinModelPortal:P92963Proteomes:UP000006548RefSeq:NP_193450.1SMR:P92963
STRING:3702.AT4G17170.1SUPFAM:SSF52540TAIR:AT4G17170tair10-symbols:AT-RAB2tair10-symbols:ATRAB-B1Btair10-symbols:ATRAB2Atair10-symbols:ATRABB1C
tair10-symbols:RAB-B1Btair10-symbols:RAB2Atair10-symbols:RABB1CTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.22725UniProt:P92963
Coordinates (TAIR10) chr4:-:9644908..9646220
Molecular Weight (calculated) 23165.60 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.23
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)