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AT4G17080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.951
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Histone H3 K4-specific methyltransferase SET7/9 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histone H3 K4-specific methyltransferase SET7/9 family protein; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: Histone H3 K4-specific methyltransferase SET7/9 family protein (TAIR:AT2G35170.1); Has 26543 Blast hits to 6479 proteins in 565 species: Archae - 0; Bacteria - 4119; Metazoa - 3892; Fungi - 164; Plants - 2567; Viruses - 0; Other Eukaryotes - 15801 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2520-MONOMEReggNOG:COG4642eggNOG:KOG0231EMBL:AY125500EMBL:BT003028EMBL:CP002687EnsemblPlants:AT4G17080
EnsemblPlants:AT4G17080.1entrez:827416GeneID:827416GO:GO:0008168GO:GO:0016021Gramene:AT4G17080.1hmmpanther:PTHR23084
hmmpanther:PTHR23084:SF163HOGENOM:HOG000242859InterPro:IPR003409KEGG:ath:AT4G17080ncoils:CoilOMA:ARSFPIKPfam:PF02493
PhylomeDB:Q8L7W4Proteomes:UP000006548RefSeq:NP_193441.5SMART:SM00698STRING:3702.AT4G17080.1SUPFAM:0038399TAIR:AT4G17080
TMHMM:TMhelixUniGene:At.45809UniGene:At.73981UniProt:Q8L7W4
Coordinates (TAIR10) chr4:+:9601570..9603815
Molecular Weight (calculated) 57709.30 Da
IEP (calculated) 10.00
GRAVY (calculated) -0.43
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)