AT4G17070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.726 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : peptidyl-prolyl cis-trans isomerases | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
peptidyl-prolyl cis-trans isomerases; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); Has 214 Blast hits to 208 proteins in 48 species: Archae - 0; Bacteria - 43; Metazoa - 9; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9595523..9598066 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37670.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.57 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPRRLNDGEP GRFTATVLLL IGLISCVIVY AVFSSVLRPS QDPTLVDSAV RFKEEPRDHD ATEDGEGGCC RGIDNLELWG PAVKWGTDFK FNSSDGCCKA 101: CKVMCSGNDG PCLCDSWVFC GNKEDCGSKF GECWLKKQKD VLVPDRQGGG EKVMWTSGLI FGQGQGIVGF ETEHGVIHVK LHPECAPHSV YYILSLLTLR 201: HCAGCQFHRA ENRGSYWDSE GNHVKNAPFG PPYAMIQGIL QAEGNIFTPI PTEHCPTISR GSVAWVGSGP EFFISLANHH EWKQSYTVFG LVLPEDMDVV 301: ETIAGLPTRA DVWNSVNVSV LEKPVSLTVR RMKTGQEQEE TGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)