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AT4G17040.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At4g17040-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At4g17040-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CLP protease R subunit 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CLP protease R subunit 4 (CLPR4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G17040-MONOMERBioGrid:12705eggNOG:COG0740eggNOG:KOG0840EMBL:AK117499EMBL:AL161545EMBL:AY081275
EMBL:AY087492EMBL:BT000050EMBL:CP002687EMBL:Z97342EnsemblPlants:AT4G17040EnsemblPlants:AT4G17040.1entrez:827412
Gene3D:3.90.226.10GeneID:827412Genevisible:Q8LB10GO:GO:0000302GO:GO:0004252GO:GO:0009507GO:GO:0009532
GO:GO:0009536GO:GO:0009570GO:GO:0009941GO:GO:0010468Gramene:AT4G17040.1hmmpanther:PTHR10381hmmpanther:PTHR10381:SF25
HOGENOM:HOG000285833InParanoid:Q8LB10IntAct:Q8LB10InterPro:IPR001907InterPro:IPR023562InterPro:IPR029045KEGG:ath:AT4G17040
KO:K01358MEROPS:S14.001OMA:AKHIGKSPANTHER:PTHR10381PaxDb:Q8LB10PDB:1R99PDBsum:1R99
Pfam:PF00574Pfam:Q8LB10PhylomeDB:Q8LB10PIR:G71438PRIDE:Q8LB10PRINTS:PR00127PRO:PR:Q8LB10
ProteinModelPortal:Q8LB10Proteomes:UP000006548RefSeq:NP_567521.1SMR:Q8LB10STRING:3702.AT4G17040.1SUPFAM:SSF52096TAIR:AT4G17040
tair10-symbols:CLPR4UniGene:At.19677UniProt:Q8LB10
Coordinates (TAIR10) chr4:-:9586740..9589297
Molecular Weight (calculated) 33442.30 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.21
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)