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AT4G16990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : disease resistance protein (TIR-NBS class), putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 6513 Blast hits to 6293 proteins in 179 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 6507; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AJ299417EMBL:AK175249EMBL:AK230430EMBL:AL161545EMBL:CP002687EMBL:Z97342EnsemblPlants:AT4G16990
EnsemblPlants:AT4G16990.1EnsemblPlants:AT4G16990.2EnsemblPlants:AT4G16990.3entrez:827407ExpressionAtlas:Q9FT77Gene3D:3.40.50.10140Gene3D:3.40.50.300
GeneID:827407Genevisible:Q9FT77GO:GO:0005524GO:GO:0007165GO:GO:0009817GO:GO:0043531GO:GO:2000071
hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20HOGENOM:HOG000064695InParanoid:Q9FT77InterPro:IPR000157InterPro:IPR002182InterPro:IPR013591
InterPro:IPR027417ncoils:CoilOMA:HEWIRTGPaxDb:Q9FT77Pfam:PF00931Pfam:PF01582Pfam:PF08381
Pfscan:PS50104Pfscan:PS51514PhylomeDB:Q9FT77PIR:F85189PRIDE:Q9FT77PRO:PR:Q9FT77PROSITE:PS50104
PROSITE:PS51514ProteinModelPortal:Q9FT77Proteomes:UP000006548RefSeq:NP_193432.4RefSeq:NP_849399.1RefSeq:NP_849400.2SMART:SM00255
SMR:Q9FT77STRING:3702.AT4G16990.2SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT4G16990tair10-symbols:RLM3UniGene:At.4452
UniProt:F4JNC3
Coordinates (TAIR10) chr4:+:9560155..9564616
Molecular Weight (calculated) 76466.50 Da
IEP (calculated) 8.26
GRAVY (calculated) -0.63
Length 670 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSSSSQSYD VFPNFRGEDV RHSLVSHLRK ELDRKFINTF NDNRIERSRK ITPELLLAIE NSRISLVVFS KNYASSTWCL DELVKIQECY EKLDQMVIPI
101: FYKVDPSHVR KQTGEFGMVF GETCKGRTEN EKRKWMRALA EVAHLAGEDL RNWRSEAEML ENIAKDVSNK LFPPSNNFSD FVGIEAHIEA LISMLRFDSK
201: KARMIGICGP SETGKTTIGR ALYSRLKSDF HHRAFVAYKR KIRSDYDQKL YWEEQFLSEI LCQKDIKIEE CGAVEQRLKH TKVLIVLDDV DDIELLKTLV
301: GRIRWFGSES KIVVITQKRE LLKAHNIAHV YEVGFPSEEL AHQMFCRYAF GKNSPPHGFN ELADEAAKIA GNRPKALKYV GSSFRRLDKE QWVKMLSEFR
401: SNGNKLKISY DELDGKGQDY VACLTNGSNS QVKAEWIHLA LGVSILLNIR SDGTTILKHL SYNRSMAQQA KIWWYENLER VCKKYNICGI DSSTDGGGST
501: YGQCSNSQFQ RNMDASPGGN KTSNQSTKDS PRASQVEKEK IEYCEPHVYI TPAIFSDGTR APKYVESSRR VTQVHHAKTW WPENCEKVYE NHNNIYGIDR
601: SIDGGDKFEG KSKVSDGGLD GKDQGSMYGQ SSNSELQINM DADNRRCEPV SEMLFKNYNV CSPNGKGSDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)