AT4G16980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : arabinogalactan-protein family | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
arabinogalactan-protein family; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 61554 Blast hits to 29210 proteins in 1485 species: Archae - 170; Bacteria - 11775; Metazoa - 21955; Fungi - 6238; Plants - 10828; Viruses - 2421; Other Eukaryotes - 8167 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9557087..9557581 | ||||||||||||||||||||
| Molecular Weight (calculated) | 16749.20 Da | ||||||||||||||||||||
| IEP (calculated) | 4.37 | ||||||||||||||||||||
| GRAVY (calculated) | 0.30 | ||||||||||||||||||||
| Length | 164 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSFSSQAF FLLTLSMVLI PFSLAQAPMM APSGSMSMPP MSSGGGSSVP PPVMSPMPMM TPPPMPMTPP PMPMTPPPMP MAPPPMPMAS PPMMPMTPST 101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)