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AT4G16950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.962
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational
Description (TAIR10)
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IGA8EMBL:AK226966EMBL:AK317019EMBL:AL161545EMBL:CP002687EMBL:Z97342
EnsemblPlants:AT4G16950EnsemblPlants:AT4G16950.1entrez:827403ExpressionAtlas:F4JNB7Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10
GeneID:827403Genevisible:F4JNB7GO:GO:0000166GO:GO:0005524GO:GO:0006952GO:GO:0007165GO:GO:0009817
GO:GO:0043531hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20InParanoid:F4JNB7InterPro:IPR000157InterPro:IPR001611InterPro:IPR002182
InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT4G16950OMA:YLVELIMPaxDb:F4JNB7
Pfam:PF00560Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104PhylomeDB:F4JNB7PIR:B85189
PRIDE:F4JNB7PRO:PR:F4JNB7PROSITE:PS50104ProteinModelPortal:F4JNB7Proteomes:UP000006548RefSeq:NP_193428.2SMART:SM00255
SMR:F4JNB7STRING:3702.AT4G16950.1SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT4G16950
tair10-symbols:RPP5UniGene:At.33039UniGene:At.43768UniGene:At.4449UniGene:At.67198UniGene:At.71837UniProt:F4JNB7
Coordinates (TAIR10) chr4:-:9539010..9544340
Molecular Weight (calculated) 164470.00 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.18
Length 1449 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAASSSSGRR RYDVFPSFSG VDVRKTFLSH LIEALDGKSI NTFIDHGIER SRTIAPELIS AIREARISIV IFSKNYASST WCLNELVEIH KCFNDLGQMV
0101: IPVFYDVDPS EVRKQTGEFG KVFEKTCEVS KDKQPGDQKQ RWVQALTDIA NIAGEDLLNG PNEAHMVEKI SNDVSNKLIT RSKCFDDFVG IEAHIEAIKS
0201: VLCLESKEAR MVGIWGQSGI GKSTIGRALF SQLSIQFPLR AFLTYKSTSG SDVSGMKLSW EKELLSEILG QKDIKIEHFG VVEQRLKHKK VLILLDDVDN
0301: LEFLKTLVGK AEWFGSGSRI IVITQDRQFL KAHDIDLVYE VKLPSQGLAL TMLCRSAFGK DSPPDDFKEL AFEVAKLAGH LPLGLNVLGS SLRRRGKKEW
0401: MEMMPRLRNG LNGDIMKTLR VSYDRLHQKD QDMFLCIACL FNGFEVSYVK DLLEDNVGLT MLSEKSLIRI TPDGHIEMHN LLEKLGREID RAKSKGNPGK
0501: RQFLTNFEDI HEVVTEKTGT ETLLGIRLPF EEYFSTRPLL IDKESFKGMR NLQYLKIGDW SDGGQPQSLV YLPLKLRLLD WDDCPLKSLP STFKAEYLVN
0601: LIMKYSKLEK LWEGTLPLGS LKKMNLLCSK NLKEIPDLSN ARNLEELDLE GCESLVTLPS SIQNAIKLRK LHCSGVILID LKSLEGMCNL EYLSVDCSRV
0701: EGTQGIVYFP SKLRLLLWNN CPLKRLHSNF KVEYLVKLRM ENSDLEKLWD GTQPLGRLKQ MFLRGSKYLK EIPDLSLAIN LEEVDICKCE SLVTFPSSMQ
0801: NAIKLIYLDI SDCKKLESFP TDLNLESLEY LNLTGCPNLR NFPAIKMGCS DVDFPEGRNE IVVEDCFWNK NLPAGLDYLD CLMRCMPCEF RPEYLVFLNV
0901: RCYKHEKLWE GIQSLGSLEE MDLSESENLT EIPDLSKATN LKHLYLNNCK SLVTLPSTIG NLQKLVRLEM KECTGLEVLP TDVNLSSLET LDLSGCSSLR
1001: TFPLISKSIK WLYLENTAIE EILDLSKATK LESLILNNCK SLVTLPSTIG NLQNLRRLYM KRCTGLEVLP TDVNLSSLGI LDLSGCSSLR TFPLISTNIV
1101: WLYLENTAIG EVPCCIEDFT RLRVLLMYCC QRLKNISPNI FRLRSLMFAD FTDCRGVIKA LSDATVVATM EDSVSCVPLS ENIEYTCERF WGELYGDGDW
1201: DLGTEYFSFR NCFKLDRDAR ELILRSCFKP VALPGGEIPK YFTYRAYGDS LTVTLPRSSL SQSFLRFKAC LVVDPLSEGK GFYRYLEVNF GFNGKQYQKS
1301: FLEDEELEFC KTDHLFFCSF KFESEMTFND VEFKFCCSNR IKECGVRLMY VSQETEYNQQ TTRSKKRMRM TSGTSEEYIN LAGDQIVADT GLAALNMELS
1401: LGEGEASSST SLEGEALSVD YMITKEQDED IPFLDPVSDG TWRSFYSAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)