AT4G16950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.802 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9539010..9544340 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 164470.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1449 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAASSSSGRR RYDVFPSFSG VDVRKTFLSH LIEALDGKSI NTFIDHGIER SRTIAPELIS AIREARISIV IFSKNYASST WCLNELVEIH KCFNDLGQMV 0101: IPVFYDVDPS EVRKQTGEFG KVFEKTCEVS KDKQPGDQKQ RWVQALTDIA NIAGEDLLNG PNEAHMVEKI SNDVSNKLIT RSKCFDDFVG IEAHIEAIKS 0201: VLCLESKEAR MVGIWGQSGI GKSTIGRALF SQLSIQFPLR AFLTYKSTSG SDVSGMKLSW EKELLSEILG QKDIKIEHFG VVEQRLKHKK VLILLDDVDN 0301: LEFLKTLVGK AEWFGSGSRI IVITQDRQFL KAHDIDLVYE VKLPSQGLAL TMLCRSAFGK DSPPDDFKEL AFEVAKLAGH LPLGLNVLGS SLRRRGKKEW 0401: MEMMPRLRNG LNGDIMKTLR VSYDRLHQKD QDMFLCIACL FNGFEVSYVK DLLEDNVGLT MLSEKSLIRI TPDGHIEMHN LLEKLGREID RAKSKGNPGK 0501: RQFLTNFEDI HEVVTEKTGT ETLLGIRLPF EEYFSTRPLL IDKESFKGMR NLQYLKIGDW SDGGQPQSLV YLPLKLRLLD WDDCPLKSLP STFKAEYLVN 0601: LIMKYSKLEK LWEGTLPLGS LKKMNLLCSK NLKEIPDLSN ARNLEELDLE GCESLVTLPS SIQNAIKLRK LHCSGVILID LKSLEGMCNL EYLSVDCSRV 0701: EGTQGIVYFP SKLRLLLWNN CPLKRLHSNF KVEYLVKLRM ENSDLEKLWD GTQPLGRLKQ MFLRGSKYLK EIPDLSLAIN LEEVDICKCE SLVTFPSSMQ 0801: NAIKLIYLDI SDCKKLESFP TDLNLESLEY LNLTGCPNLR NFPAIKMGCS DVDFPEGRNE IVVEDCFWNK NLPAGLDYLD CLMRCMPCEF RPEYLVFLNV 0901: RCYKHEKLWE GIQSLGSLEE MDLSESENLT EIPDLSKATN LKHLYLNNCK SLVTLPSTIG NLQKLVRLEM KECTGLEVLP TDVNLSSLET LDLSGCSSLR 1001: TFPLISKSIK WLYLENTAIE EILDLSKATK LESLILNNCK SLVTLPSTIG NLQNLRRLYM KRCTGLEVLP TDVNLSSLGI LDLSGCSSLR TFPLISTNIV 1101: WLYLENTAIG EVPCCIEDFT RLRVLLMYCC QRLKNISPNI FRLRSLMFAD FTDCRGVIKA LSDATVVATM EDSVSCVPLS ENIEYTCERF WGELYGDGDW 1201: DLGTEYFSFR NCFKLDRDAR ELILRSCFKP VALPGGEIPK YFTYRAYGDS LTVTLPRSSL SQSFLRFKAC LVVDPLSEGK GFYRYLEVNF GFNGKQYQKS 1301: FLEDEELEFC KTDHLFFCSF KFESEMTFND VEFKFCCSNR IKECGVRLMY VSQETEYNQQ TTRSKKRMRM TSGTSEEYIN LAGDQIVADT GLAALNMELS 1401: LGEGEASSST SLEGEALSVD YMITKEQDED IPFLDPVSDG TWRSFYSAE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)