AT4G16790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.949 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60380.1); Has 8255 Blast hits to 6141 proteins in 463 species: Archae - 4; Bacteria - 400; Metazoa - 3327; Fungi - 1159; Plants - 2082; Viruses - 247; Other Eukaryotes - 1036 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9451747..9453168 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53300.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.88 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||
| Length | 473 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVEARSLKKP IQLGNKEDQN PRKFYSRFIF KALILTVLCA VVPVFLSQTP ELANQTRLLE LLHLVFVGIA VSYGLFSRRN YDGGGGGGTS NSDHNKADHS 101: NNNSHSYVPK ILEVSSVFNV GHESESEPSD DSSGDQRKFQ TWKNKYHMKI PEVETRFVDR VSSENREKPL LLPVRSLNYS RVSDSSGDNS GRWEKVRSKR 201: ELLKTLGDDN SDVLPSPIPW RSRSSSSSSS SSKEVESLPS VKNLTTVESQ PLIKNLTPPS SFSSPRKSNP IPNLASEFHP SPPPPPPPPP PLPAFYNSSS 301: RKDHPGIYRV ERRESSVHKT KFAGGEFHPP PPPPPPPPVE YYKSPPTKFR LSNERRKSSE QKMKRNAPKK VWWSDPIVES KEQDTEKNDQ RSNLGSKAVE 401: ESENGEQRRG ENEIHDEVEK KIVEEEGVSE INNGSDVDKK ADEFIAKFRE QIRLQRIESI KRSTNKISAN SSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)