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AT4G16780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 2
Curator
Summary (TAIR10)
Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.
Computational
Description (TAIR10)
homeobox protein 2 (HB-2); CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (TAIR:AT5G47370.1); Has 7230 Blast hits to 7123 proteins in 465 species: Archae - 0; Bacteria - 0; Metazoa - 4716; Fungi - 327; Plants - 2046; Viruses - 18; Other Eukaryotes - 123 (source: NCBI BLink).
Protein Annotations
BioGrid:12677eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AF375453EMBL:AL161544EMBL:AY081747EMBL:AY174653
EMBL:AY174654EMBL:AY174655EMBL:AY174656EMBL:CP002687EMBL:EF193551EMBL:EF193552EMBL:EF193553
EMBL:EF193554EMBL:EF193555EMBL:EF193556EMBL:EF193557EMBL:EF193558EMBL:EF193559EMBL:EF193560
EMBL:EF193561EMBL:EF193562EMBL:EF193563EMBL:EF193564EMBL:EF193565EMBL:M90394EMBL:X68145
EMBL:X68146EMBL:Z19602EMBL:Z97342EnsemblPlants:AT4G16780EnsemblPlants:AT4G16780.1entrez:827384Gene3D:1.10.10.60
GeneID:827384Genevisible:Q05466GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0008283GO:GO:0009585
GO:GO:0009641GO:GO:0009733GO:GO:0009735GO:GO:0009826GO:GO:0010016GO:GO:0010017GO:GO:0010218
GO:GO:0042803GO:GO:0043565GO:GO:0045892GO:GO:0048364Gramene:AT4G16780.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF140
InParanoid:Q05466IntAct:Q05466InterPro:IPR000047InterPro:IPR001356InterPro:IPR003106InterPro:IPR006712InterPro:IPR009057
InterPro:IPR017970KEGG:ath:AT4G16780KO:K09338ncoils:CoilOMA:ASACHEMPaxDb:Q05466Pfam:PF00046
Pfam:PF02183Pfam:PF04618Pfam:Q05466Pfscan:PS50071PhylomeDB:Q05466PIR:S31424PRIDE:Q05466
PRINTS:PR00031PRO:PR:Q05466PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:Q05466Proteomes:UP000006548RefSeq:NP_193411.1
scanprosite:PS00027SMART:SM00340SMART:SM00389SMR:Q05466STRING:3702.AT4G16780.1SUPFAM:SSF46689TAIR:AT4G16780
tair10-symbols:ATHB-2tair10-symbols:ATHB2tair10-symbols:HAT4tair10-symbols:HB-2UniGene:At.24419UniGene:At.74809UniProt:Q05466
Coordinates (TAIR10) chr4:+:9449291..9450604
Molecular Weight (calculated) 31854.20 Da
IEP (calculated) 9.02
GRAVY (calculated) -0.87
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)