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AT4G16710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.954
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyltransferase family protein 28
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyltransferase family protein 28; FUNCTIONS IN: transferase activity, transferring hexosyl groups, carbohydrate binding, transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, biosynthetic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28, C-terminal (InterPro:IPR007235); Has 641 Blast hits to 636 proteins in 314 species: Archae - 10; Bacteria - 242; Metazoa - 125; Fungi - 122; Plants - 50; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G16710-MONOMERBioCyc:ARA:GQT-586-MONOMERCAZy:GT1DNASU:827374eggNOG:COG5017eggNOG:KOG3349EMBL:AK229724
EMBL:AL161544EMBL:BT010187EMBL:CP002687EMBL:Z97341EnsemblPlants:AT4G16710EnsemblPlants:AT4G16710.1EnsemblPlants:AT4G16710.2
entrez:827374GeneID:827374GO:GO:0016758Gramene:AT4G16710.1Gramene:AT4G16710.2gramene_plant_reactome:1119436gramene_plant_reactome:6876556
hmmpanther:PTHR12867HOGENOM:HOG000192807InterPro:IPR007235KEGG:00550+2.4.1.227KEGG:ath:AT4G16710KO:K07432OMA:QKQGYVI
Pfam:PF04101PhylomeDB:O23514PIR:D71434Proteomes:UP000006548RefSeq:NP_193404.1RefSeq:NP_849397.1SMR:O23514
STRING:3702.AT4G16710.1SUPFAM:SSF53756TAIR:AT4G16710UniGene:At.33054unipathway:UPA00219UniProt:O23514
Coordinates (TAIR10) chr4:+:9398818..9399618
Molecular Weight (calculated) 19583.40 Da
IEP (calculated) 5.57
GRAVY (calculated) -0.11
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEDRENAKR VVFVTVGTTS FDALVKAVVS QNVKDELQKR GFTHLLIQMG RGIFFPTKCD GADGSLVVDY FTFSSSIADY IRSASLVISH AGSGSIFETL
101: KLGKPLIVVV NEDLMDNHQC ELAEALEERK HLYYTRPHSL HQTLTKMELG SLVQYTPGDG TPVARIIDRF LGFPDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)