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AT4G16520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
autophagy 8f (ATG8F); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G60640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12644eggNOG:ENOG4111JATeggNOG:KOG1654EMBL:AB073180EMBL:AL161544EMBL:AY070464EMBL:AY091667
EMBL:CP002687EMBL:Z97341EnsemblPlants:AT4G16520EnsemblPlants:AT4G16520.1EnsemblPlants:AT4G16520.2entrez:827351GeneID:827351
Genevisible:Q8VYK7GO:GO:0000421GO:GO:0005874GO:GO:0006914GO:GO:0006995GO:GO:0015031GO:GO:0033110
Gramene:AT4G16520.1Gramene:AT4G16520.2hmmpanther:PTHR10969hmmpanther:PTHR10969:SF39HOGENOM:HOG000232034InParanoid:Q8VYK7IntAct:Q8VYK7
InterPro:IPR004241InterPro:IPR029071KEGG:ath:AT4G16520KO:K08341OMA:CEKVENSPANTHER:PTHR10969PaxDb:Q8VYK7
Pfam:PF02991Pfam:Q8VYK7PhylomeDB:Q8VYK7PIR:B71432PRIDE:Q8VYK7PRO:PR:Q8VYK7ProteinModelPortal:Q8VYK7
Proteomes:UP000006548RefSeq:NP_567504.1RefSeq:NP_849395.1SMR:Q8VYK7STRING:3702.AT4G16520.1SUPFAM:SSF54236TAIR:AT4G16520
tair10-symbols:ATG8FUniGene:At.28608UniProt:Q8VYK7
Coordinates (TAIR10) chr4:-:9306882..9308113
Molecular Weight (calculated) 13762.60 Da
IEP (calculated) 9.27
GRAVY (calculated) -0.41
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKSSFKQEH DLEKRRAEAA RIREKYPDRI PVIVEKAEKS DIPTIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPAGA LMSSVYEEKK
101: DDDGFLYVTY SGENTFGFGS P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)