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AT4G16470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 33210 Blast hits to 13021 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 34; Plants - 32761; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL161544EMBL:CP002687
EMBL:Z97341EnsemblPlants:AT4G16470EnsemblPlants:AT4G16470.1entrez:827345
GeneID:827345Genevisible:O23491Gramene:AT4G16470.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF484HOGENOM:HOG000237569InParanoid:O23491InterPro:IPR002885
KEGG:ath:AT4G16470OMA:GRLHDAYPaxDb:O23491Pfam:O23491
Pfam:PF13041Pfscan:PS51375PhylomeDB:O23491PIR:E71431
PRIDE:O23491PRO:PR:O23491PROSITE:PS51375ProteinModelPortal:O23491
Proteomes:UP000006548RefSeq:NP_193380.3SMR:O23491STRING:3702.AT4G16470.1
TAIR:AT4G16470TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65392
UniProt:O23491
Coordinates (TAIR10) chr4:-:9287862..9289541
Molecular Weight (calculated) 56801.90 Da
IEP (calculated) 9.20
GRAVY (calculated) -0.26
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTLISSSLS HKSQCLTICF KLNKLAMVYY TREFQTEASQ TSASGSMFSG NATTILRRML AEKRIGRFQV ENQRKTEKLD KTLKGLCVTG RLKEAVGLLW
101: SSGLQVEPET YAVLLQECKQ RKEYTKGKRI HAQMFVVGFA LNEYLKVKLL ILYALSGDLQ TAGILFRSLK IRDLIPWNAM ISGYVQKGLE QEGLFIYYDM
201: RQNRIVPDQY TFASVFRACS ALDRLEHGKR AHAVMIKRCI KSNIIVDSAL VDMYFKCSSF SDGHRVFDQL STRNVITWTS LISGYGYHGK VSEVLKCFEK
301: MKEEGCRPNP VTFLVVLTAC NHGGLVDKGW EHFYSMKRDY GIEPEGQHYA AMVDTLGRAG RLQEAYEFVM KSPCKEHPPV WGSLLGACRI HGNVKLLELA
401: ATKFLELDPT NGGNYVVFAN GYASCGLREA ASKVRRKMEN AGVKKDPGYS QIELQGEVHR FMKDDTSHRL SEKIYKKVHE MTSFFMDIDY YPDGLDSSCP
501: V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)