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AT4G16420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homolog of yeast ADA2 2B
Curator
Summary (TAIR10)
Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.
Computational
Description (TAIR10)
homolog of yeast ADA2 2B (ADA2B); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homolog of yeast ADA2 2A (TAIR:AT3G07740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12629eggNOG:COG5114eggNOG:KOG0457EMBL:AF338770EMBL:AL161544EMBL:AY050348EMBL:AY143911
EMBL:BX827435EMBL:BX827480EMBL:CP002687EMBL:Z97341EnsemblPlants:AT4G16420EnsemblPlants:AT4G16420.1entrez:827336
Gene3D:1.10.10.60GeneID:827336Genevisible:Q9ATB4GO:GO:0003677GO:GO:0003682GO:GO:0003700GO:GO:0003713
GO:GO:0005634GO:GO:0006338GO:GO:0006351GO:GO:0006357GO:GO:0008270GO:GO:0009631GO:GO:0009733
GO:GO:0009735GO:GO:0016573GO:GO:0035066GO:GO:0042127hmmpanther:PTHR12374hmmpanther:PTHR12374:SF23HOGENOM:HOG000163455
InParanoid:Q9ATB4IntAct:Q9ATB4InterPro:IPR000433InterPro:IPR001005InterPro:IPR007526InterPro:IPR009057InterPro:IPR017884
KEGG:ath:AT4G16420KO:K11314OMA:RIRCADKPaxDb:Q9ATB4Pfam:PF00249Pfam:PF00569Pfam:Q9ATB4
Pfscan:PS50135Pfscan:PS50934Pfscan:PS51293PhylomeDB:Q9ATB4PIR:H71430PRIDE:Q9ATB4PRO:PR:Q9ATB4
PROSITE:PS01357PROSITE:PS50135PROSITE:PS50934PROSITE:PS51293ProteinModelPortal:Q9ATB4Proteomes:UP000006548RefSeq:NP_567495.1
RefSeq:NP_974560.1RefSeq:NP_974561.1scanprosite:PS01357SMART:SM00291SMART:SM00717SMR:Q9ATB4STRING:3702.AT4G16420.1
SUPFAM:SSF46689SUPFAM:SSF57850TAIR:AT4G16420tair10-symbols:ADA2Btair10-symbols:PRZ1UniGene:At.4412UniGene:At.71096
UniGene:At.72978UniProt:Q9ATB4
Coordinates (TAIR10) chr4:-:9262805..9265775
Molecular Weight (calculated) 56188.80 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.80
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKESFVD RSFGGKKPVS TSVNNSLVEL SNYNQKREEF DPEYDNDAEQ LLAEMEFKEN DTPEEHELKL RVLRIYSKRL DERKRRKEFI IERNLLYPNP
301: FEKDLSQEEK VQCRRLDVFM RFHSKEEHDE LLRNVVSEYR MVKRLKDLKE AQVAGCRSTA EAERYLGRKR KRENEEGMNR GKESGQFGQI AGEMGSRPPV
401: QASSSYVNDL DLIGFTESQL LSESEKRLCS EVKLVPPVYL QMQQVMSHEI FKGNVTKKSD AYSLFKIDPT KVDRVYDMLV KKGIAQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)