suba logo
AT4G16270.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.677
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G50990.1); Has 4922 Blast hits to 4898 proteins in 352 species: Archae - 0; Bacteria - 20; Metazoa - 11; Fungi - 467; Plants - 4342; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G16270-MONOMEREC:1.11.1.7eggNOG:ENOG410IHXAeggNOG:ENOG410YEGNEMBL:AK175661EMBL:AK175982EMBL:AL161543
EMBL:BT011747EMBL:CP002687EMBL:Z97340EnsemblPlants:AT4G16270EnsemblPlants:AT4G16270.1entrez:827322GeneID:827322
Genevisible:O23474GO:GO:0004601GO:GO:0005576GO:GO:0006979GO:GO:0020037GO:GO:0042744GO:GO:0046872
Gramene:AT4G16270.1hmmpanther:PTHR31388hmmpanther:PTHR31388:SF44HOGENOM:HOG000237557InParanoid:O23474InterPro:IPR000823InterPro:IPR002016
InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794KEGG:00940+1.11.1.7KEGG:ath:AT4G16270KO:K00430PaxDb:O23474
PeroxiBase:206Pfam:O23474Pfam:PF00141Pfscan:PS50873PhylomeDB:O23474PRIDE:O23474PRINTS:PR00458
PRINTS:PR00461PRO:PR:O23474PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:O23474Proteomes:UP000006548
RefSeq:NP_193362.2scanprosite:PS00435scanprosite:PS00436SMR:O23474STRING:3702.AT4G16270.1SUPFAM:SSF48113TAIR:AT4G16270
TMHMM:TMhelixUniGene:At.50347UniGene:At.67828UniProt:O23474
Coordinates (TAIR10) chr4:+:9205038..9206483
Molecular Weight (calculated) 39229.40 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.10
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKLRRKWSD HITTMKNLFN LFLMFFFAMP ILSLSENPTN FSESCEDGSG ETGSSFGIGF DLVLDFGLYR NSCPEAESIV YSWVETTVLE DPRMAASLLR
101: LHFHDCFVNG CDASVLLDDT EGLVGEKTAP PNLNSLRGFE VIDSIKSDIE SVCPETVSCA DILAMAARDS VVVSGGPRWE VEVGRKDSRT ASKQAATNGL
201: PSPNSTVSTL ISTFQNLGLS QTDMVALSGG HTLGKARCTS FTARLQPLQT GQPANHGDNL EFLESLQQLC STVGPSVGIT QLDLVTPSTF DNQYYVNLLS
301: GEGLLPSDQA LAVQDPGTRA IVETYATDQS VFFEDFKNAM VKMGGIPGGS NSEIRKNCRM IN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)