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AT4G16180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF3JeggNOG:ENOG410Y73EEMBL:AY800635EMBL:CP002687
EnsemblPlants:AT4G16180EnsemblPlants:AT4G16180.1entrez:827310ExpressionAtlas:Q5Q0B6
GeneID:827310Gramene:AT4G16180.1hmmpanther:PTHR31515hmmpanther:PTHR31515:SF0
PhylomeDB:Q5Q0B6Proteomes:UP000006548RefSeq:NP_193353.2TAIR:AT4G16180
TMHMM:TMhelixUniGene:At.43288UniProt:Q5Q0B6
Coordinates (TAIR10) chr4:-:9168562..9170323
Molecular Weight (calculated) 30622.10 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.28
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MELRSDSRSS SFSSLLFVAF LLFLCGLVSR TDSAQQPFRR EPGHPHWHHS AFLDVRESVR SDVRRMLHSR AEVPFQVPLE VNIVLVGLNG DGGYRYSVDP
101: QKLEEFLRAS FSTHRPSCQE TGEPLDIEHR VVYNIFPSGQ PELIALEKAV KEAMVPAGTA LEADFGRHLP AYDVEAIKVE SAFNQLYSYI FDIDVGSGSA
201: ATADKPIPSA IFVVNFDKVR MDPKNTEIDL DSLMFAKLPE LSDADKEKQE ADYIYRYRYN GGGASQVWLA SGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)