suba logo
AT4G16155.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22318864 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dihydrolipoyl dehydrogenases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dihydrolipoyl dehydrogenases; FUNCTIONS IN: dihydrolipoyl dehydrogenase activity; INVOLVED IN: oxidation reduction, cell redox homeostasis; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: lipoamide dehydrogenase 1 (TAIR:AT3G16950.1); Has 29334 Blast hits to 29301 proteins in 3032 species: Archae - 559; Bacteria - 20043; Metazoa - 811; Fungi - 377; Plants - 519; Viruses - 0; Other Eukaryotes - 7025 (source: NCBI BLink).
Protein Annotations
BioGrid:12601EC:1.8.1.4eggNOG:COG1249eggNOG:KOG1335EMBL:AF228638EMBL:AL161543EMBL:AY050877
EMBL:AY054195EMBL:AY113958EMBL:CP002687EMBL:Z97340EnsemblPlants:AT4G16155EnsemblPlants:AT4G16155.1entrez:827307
Gene3D:3.30.390.30Gene3D:3.50.50.60GeneID:827307Genevisible:F4JLP5GO:GO:0004148GO:GO:0009507GO:GO:0009570
GO:GO:0009941GO:GO:0045454GO:GO:0046685GO:GO:0050660Gramene:AT4G16155.1hmmpanther:PTHR22912hmmpanther:PTHR22912:SF165
HOGENOM:HOG000276708InParanoid:F4JLP5InterPro:IPR004099InterPro:IPR012999InterPro:IPR016156InterPro:IPR023753iPTMnet:F4JLP5
KEGG:ath:AT4G16155KO:K00382PaxDb:F4JLP5Pfam:F4JLP5Pfam:PF02852Pfam:PF07992PhylomeDB:F4JLP5
PRIDE:F4JLP5PRO:PR:F4JLP5PROSITE:PS00076ProteinModelPortal:F4JLP5Proteomes:UP000006548RefSeq:NP_567487.4scanprosite:PS00076
SMR:F4JLP5STRING:3702.AT4G16155.1SUPFAM:SSF51905SUPFAM:SSF55424TAIR:AT4G16155UniGene:At.16906UniGene:At.20170
UniProt:F4JLP5
Coordinates (TAIR10) chr4:-:9153570..9157322
Molecular Weight (calculated) 67094.00 Da
IEP (calculated) 7.84
GRAVY (calculated) 0.07
Length 630 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSELDIIAG NFEISGLKTR NVTRVISALI SPPPLVGVRL VQTCHLRHSL FLYTDLSFTL SYTMQSVLSL SFSQASLPLA NRTLCSSNAA PSTPRNLRFC
101: GLRREAFCFS PSKQLTSCRF HIQSRRIEVS AAASSSAGNG APSKSFDYDL IIIGAGVGGH GAALHAVEKG LKTAIIEGDV VGGTCVNRGC VPSKALLAVS
201: GRMRELQNEH HMKAFGLQVS AAGYDRQGVA DHASNLATKI RNNLTNSMKA LGVDILTGFG AVLGPQKVKY GDNIITGKDI IIATGSVPFV PKGIEVDGKT
301: VITSDHALKL ESVPDWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL AQRVLINTRK IDYHTGVFAS KITPAKDGKP VLIELIDAKT
401: KEPKDTLEVD AALIATGRAP FTNGLGLENI NVTTQRGFIP VDERMRVIDG NGKLVPHLYC IGDANGKLML AHAASAQGIS VVEQVTGRDH VLNHLSIPAA
501: CFTHPEISMV GLTEPQAREK AEKEGFKVSI AKTSFKANTK ALAENEGEGL AKMIYRPDNG EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP
601: TLSEVVDELF KAAKVDSPAS VTAQSVKVTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)