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AT4G16146.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cAMP-regulated phosphoprotein 19-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cAMP-regulated phosphoprotein 19-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: cAMP-regulated phosphoprotein/endosulphine conserved region (InterPro:IPR006760); BEST Arabidopsis thaliana protein match is: cAMP-regulated phosphoprotein 19-related protein (TAIR:AT1G69510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3FSeggNOG:ENOG410YZR5EMBL:CP002687EnsemblPlants:AT4G16146EnsemblPlants:AT4G16146.1entrez:827304GeneID:827304
Gramene:AT4G16146.1hmmpanther:PTHR34804hmmpanther:PTHR34804:SF1InParanoid:F4JLP3InterPro:IPR006760iPTMnet:F4JLP3KEGG:ath:AT4G16146
OMA:EASIDQRPaxDb:F4JLP3Pfam:PF04667PRIDE:F4JLP3Proteomes:UP000006548RefSeq:NP_567486.1STRING:3702.AT4G16146.1
TAIR:AT4G16146UniGene:At.33107UniProt:F4JLP3
Coordinates (TAIR10) chr4:-:9142663..9144356
Molecular Weight (calculated) 11474.60 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.82
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MATDCNRVND FLFSQQQEST SGANKYGGLV PKKKPLISKD SKRAFFDSAD WALLKQEASI DQRTIAAIEK LRPKLQRTPR KQLSPRRPTC ATGNENLTES
101: SF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)