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AT4G16060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKFReggNOG:ENOG411081HEMBL:CP002687EnsemblPlants:AT4G16060EnsemblPlants:AT4G16060.1entrez:827291GeneID:827291
GO:GO:0005829GO:GO:0009507GO:GO:0009570Gramene:AT4G16060.1hmmpanther:PTHR35748InParanoid:F4JKZ9iPTMnet:F4JKZ9
KEGG:ath:AT4G16060OMA:EPCEGETPaxDb:F4JKZ9PRIDE:F4JKZ9ProteinModelPortal:F4JKZ9Proteomes:UP000006548RefSeq:NP_193341.3
STRING:3702.AT4G16060.1TAIR:AT4G16060UniGene:At.33115UniProt:F4JKZ9
Coordinates (TAIR10) chr4:+:9094424..9096147
Molecular Weight (calculated) 32726.90 Da
IEP (calculated) 7.37
GRAVY (calculated) -0.34
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MIALSLSVSL TSLPFSFAFS STPCKSRASP PRSTVSLSSS RRRQDRRRSI EAMSQVMELE DESDFEKLLS SDNRISITGF GSLLSERSAR STFPDLENFR
101: IAKLQGFRRV FAHSAPIFFE RGIANPETKE ISSLSVEPCE GESLVVTVFE IKSSEIPAFI GRELEFRFLA VVPETLEGKP YTNSAVLCGR YSDEEFFQIR
201: CKGNKGIYFQ HYGRFKIDKI WRDDILPCRL YLRHCVLAAK NLGDEAYNNF LDHTFLGDRK TTIREYLSST GSGIMEEEPP EALKSRYGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)