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AT4G15930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.959
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Dynein light chain type 1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2, conserved site (InterPro:IPR019763), Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT5G20110.1); Has 1403 Blast hits to 1403 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 108; Plants - 264; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111NK2eggNOG:KOG3430EMBL:BT004785EMBL:CP002687EnsemblPlants:AT4G15930EnsemblPlants:AT4G15930.1entrez:827275
Gene3D:3.30.740.10GeneID:827275GO:GO:0005875GO:GO:0007017Gramene:AT4G15930.1hmmpanther:PTHR11886HOGENOM:HOG000211144
IntAct:Q84VW0InterPro:IPR001372InterPro:IPR019763KEGG:ath:AT4G15930KO:K10418OMA:QIKSADMPANTHER:PTHR11886
Pfam:PF01221PhylomeDB:Q84VW0PROSITE:PS01239Proteomes:UP000006548Reactome:R-ATH-1632852RefSeq:NP_193328.4scanprosite:PS01239
SMART:SM01375SMR:Q84VW0STRING:3702.AT4G15930.1SUPFAM:SSF54648TAIR:AT4G15930UniGene:At.25487UniGene:At.67059
UniProt:Q84VW0
Coordinates (TAIR10) chr4:+:9036344..9037825
Molecular Weight (calculated) 13793.40 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.60
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)