AT4G15890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome condensation protein, HCP-6-related (InterPro:IPR012371), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G57060.1); Has 443 Blast hits to 428 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 128; Plants - 61; Viruses - 3; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9017453..9022745 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 144746.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.54 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1314 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDEELLLTRI LAGIEGGDDE SDYHELVTDL KSLLDTDDDE ILNRFYGSLS SMASSFLRCI SAAMDSPVES GRLAILASDA YLSLLLSTNC PVFTFFSPIA 0101: FLSLLGSIRR YLKRRDDSAG QGSNSQREKG NKKKRGRGKR NLGYEDGEET EEGGFDAKLM FIVLEKLGSV LSFVHLDRFP DSLKSLVQTV SEIPLLALEH 0201: SGVLNYDRLM EMCGKILGGV LNSDHGDMAL TAAEISKSLT PLLLMGKHQA RSFALGFVSR KLMSLAKDNP ELKKVVSNLP KFLVHKAPEK AEPRGFAVEA 0301: VLEIVKAMEV EGQSEFVDFV MKMCQGKSNF RVLAVDIIPL LISSLGNPLG DISSENGLKD SWGLGCIDAL VQRCSDTSAL IRARALSNLA QVVEFLSGDE 0401: RSRSILKQAL GFNGETSEGK GAVTDLLKKR CVDEKAAVRR AALLLVTKLT SLMGGCFDGS ILKTMGTSCS DPLISIRKAA VSAISEAFRI CTDEIVTTEW 0501: LHSVPRMIMD NETSIQEECE NVFHELVLER ILRAGNVLSP DSASLPNNRN TTSKDLDRDI EALFPEGVLV LLRELCNSEV SPWVTKICGS LGKKKRLKPR 0601: VALALQCIIK ESESLWLSRS MPINRWTAPA GAWFLLSEVS VYLSKSVEWE FLHHHWQLLD KNDVQGLDEQ GDEQGVECNS STWAGDRVCL LQTISNVSLQ 0701: LPAEPAADLA DNLLKKIENF NLHSAEVDAH VKALKTLCKK KASTSEEADM LVKKWVEQVS LKASKVTEKY IEGVSSHNHS FVTPATLGSR RSKRLDTVSK 0801: KLSKAVTAVY TIGSCVIIYP SADTTKIVPF LHTVITSGNS DSKLKNKLPQ ANVCLKQKAP LLYSQSWLTM AKMCLADGKL AKRYLPLFAQ ELEKSDCAAL 0901: RNNLVVAMTD FCVHYTAMIE CYIPKITKRL RDPCEVVRRQ TFILLSRLLQ RDYVKWRGVL FLRFLLSLVD ESEKIRRLAD FLFGSILKVK APLLAYNSFV 1001: EAIYVLNDCH AHTGHSNPDS KQSRTKDQVF SIRGNDERAR SKRMQIYVTL LKQMAPEHLL ATFAKLCAEI LAAASDGMLN IEDVTGQSVL QDAFQILACK 1101: EIRLSVSRGA SSETADIEEE GGDAATAKGR AITHAVRKGL IQNTIPIFIE LKRLLESKNS PLTGSLMDCL RVLLKDYKNE IEEMLVADKQ LQKELVYDMQ 1201: KHEAAKARSM ANQGVACGTS HRNGEPEASA ASEENVRDSG LESRVVSAAA DVVAAKAARS VLREVNGGAA TPPLSAMSVP KLRSSRGVSQ SGRPSADVLE 1301: SLRRRPTFMS DDES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)