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AT4G15840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.679
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BTB/POZ domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); Has 3394 Blast hits to 3343 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 3006; Fungi - 79; Plants - 135; Viruses - 80; Other Eukaryotes - 94 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJGTeggNOG:ENOG4110Z5VEMBL:CP002687EnsemblPlants:AT4G15840EnsemblPlants:AT4G15840.1entrez:827265GeneID:827265
Gramene:AT4G15840.1hmmpanther:PTHR24412hmmpanther:PTHR24412:SF142InParanoid:F4JKX0InterPro:IPR000210InterPro:IPR011333KEGG:ath:AT4G15840
OMA:PSEEAYHPaxDb:F4JKX0Pfam:PF00651Pfscan:PS50097PRIDE:F4JKX0PROSITE:PS50097ProteinModelPortal:F4JKX0
Proteomes:UP000006548RefSeq:NP_193319.6SMART:SM00225SMR:F4JKX0SUPFAM:SSF54695TAIR:AT4G15840UniGene:At.33136
UniProt:F4JKX0
Coordinates (TAIR10) chr4:+:8996963..9000852
Molecular Weight (calculated) 91791.90 Da
IEP (calculated) 5.21
GRAVY (calculated) -0.30
Length 836 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQEYRNSRT TVTHHQHHHQ MRMTVPPPPS PQPSPPVLPH AESDQSTSEL RSLDCNLTSL CDHIQSEGFG SGAFSDVVVK AMGSSYHLHR LILSRSSYFR
101: TMLQGPWKEA SSPVVNLLVD DKNVNGDAIS VALAYLYGYH PKLDDDNAFR VLAAASFLDL QDLCAICTDF IISELRTSNF LAYQVFAESQ DYGIHGERVR
201: NACWGYLCQS GAVELREMLP KLSAQTLCAL LTSDELWVPS EEKRFELALY AFIANSALSN SDHSNQDSRF ERETSFPLDS AISKGKNVMD DFSFRSLDCK
301: LGHLDIEADL RDASDDVIVP LTEGVIDFQR GVSGSNLVFQ QSSNSQTNFG RPCTSVVDKT EGSVVAIEGP SEEAYHLSND SWLSGADSRN SPTLGSSSDG
401: FVVNEWGNCG VSALTWGGRV VGTRQGTGSV KGKYGFTEEE YSAFVNTFEG GSLLYCNMSF EILLNARKEL EELGFPCKAV NDGLWLQMLL SQRVQEVAAN
501: TCKRCCLISI ACACKQGFGV SHGATFNNYY CQENVQNNMM GDMDNVYVPE SSQGDGIGIF KPVRISVRGQ HIDGLAGIGC EATFVPPPAW PPTPFVYSRV
601: PINRNGQQSI ASDGSEGRID QSGEISKDGL TALVGLSQGT SGVGNNPRGE QTEGGRGSGA TVGMSEPKEP SVGTEWENAS CTISLDTKTP LCHFPPFRFG
701: VEFEDVHRLA NGHVEHSPEF FYAGSLWKIS IQAFNDEDPQ GRRTIGLFLH RRKAEIVDSV RKVHVYIDPR DKVTARYQLI CPSKREVMLF GSFKQRGTLL
801: PKAPKGWGWR TALLFDELSE LLQNGALRVA AVVQLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)