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AT4G15790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J159eggNOG:ENOG410XX9YEMBL:AY072116EMBL:AY122964
EMBL:CP002687EnsemblPlants:AT4G15790EnsemblPlants:AT4G15790.1entrez:827259
GeneID:827259Gramene:AT4G15790.1hmmpanther:PTHR34681hmmpanther:PTHR34681:SF2
KEGG:ath:AT4G15790ncoils:CoilOMA:KDNTNPVPhylomeDB:Q8VYF2
Proteomes:UP000006548RefSeq:NP_567475.5STRING:3702.AT4G15790.1TAIR:AT4G15790
UniGene:At.33141UniProt:Q8VYF2
Coordinates (TAIR10) chr4:+:8982390..8984069
Molecular Weight (calculated) 16531.10 Da
IEP (calculated) 4.52
GRAVY (calculated) -1.02
Length 147 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQTSDSTS PVAPLSVSSP TATKKDNTNP VDSKLTELNE SRAELLNRIQ NLKQDLQSWR GKLDTQVKVY REELSGLKKT LNLEVEQLRE EFKDLKTTLN
101: QQQDDVSASL KSLGLQDSKE QIDKRSEVTE EKVEALSTDD NAKEAEH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)