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AT4G15780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vesicle-associated membrane protein 724
Curator
Summary (TAIR10)
member of VAMP72 Gene Family
Computational
Description (TAIR10)
vesicle-associated membrane protein 724 (VAMP724); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 726 (TAIR:AT1G04760.1); Has 2208 Blast hits to 2205 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 886; Fungi - 363; Plants - 574; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5143eggNOG:KOG0859EMBL:AL161542EMBL:BT014777EMBL:BT015012EMBL:CP002687EMBL:Z97339
EnsemblPlants:AT4G15780EnsemblPlants:AT4G15780.1entrez:827258Gene3D:1.10.3840.10Gene3D:3.30.450.50GeneID:827258Genevisible:O23429
GO:GO:0005886GO:GO:0015031GO:GO:0016021GO:GO:0016192GO:GO:0031901Gramene:AT4G15780.1hmmpanther:PTHR21136
hmmpanther:PTHR21136:SF72HOGENOM:HOG000042712InParanoid:O23429InterPro:IPR001388InterPro:IPR010908InterPro:IPR011012KEGG:ath:AT4G15780
KO:K08511ncoils:CoilPaxDb:O23429Pfam:O23429Pfam:PF00957Pfam:PF13774Pfscan:PS50859
Pfscan:PS50892PhylomeDB:O23429PRINTS:PR00219PRO:PR:O23429PROSITE:PS00417PROSITE:PS50859PROSITE:PS50892
ProteinModelPortal:O23429Proteomes:UP000006548RefSeq:NP_193313.5scanprosite:PS00417SMART:SM01270SMR:O23429STRING:3702.AT4G15780.1
SUPFAM:SSF58038SUPFAM:SSF64356TAIR:AT4G15780tair10-symbols:ATVAMP724tair10-symbols:VAMP724TMHMM:TMhelixUniGene:At.33142
UniProt:O23429
Coordinates (TAIR10) chr4:-:8980081..8981697
Molecular Weight (calculated) 25238.70 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.15
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGYAYCVVA KDSLSKQISI AFLERVKADF KKRYGGGKAS
101: TAIAKSLNKE FGPVMKEHMN YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAREYKKQ GTQVRRKLWY QNMKIKLVVL
201: GILLLLVLII WISVCHGFNC TD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)