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AT4G15770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.582
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome assembly, ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosome biogenesis factor NIP7-like (InterPro:IPR005155), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Ribosome biogenesis factor, NIP7 (InterPro:IPR016686); Has 438 Blast hits to 438 proteins in 213 species: Archae - 5; Bacteria - 0; Metazoa - 151; Fungi - 132; Plants - 49; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1374eggNOG:KOG3492EMBL:BT012125EMBL:CP002687
EnsemblPlants:AT4G15770EnsemblPlants:AT4G15770.1entrez:827257Gene3D:2.30.130.10
GeneID:827257GO:GO:0003723GO:GO:0005634GO:GO:0005829
GO:GO:0042255Gramene:AT4G15770.1hmmpanther:PTHR23415hmmpanther:PTHR23415:SF4
HOGENOM:HOG000168475InterPro:IPR002478InterPro:IPR005155InterPro:IPR015947
InterPro:IPR016686KEGG:ath:AT4G15770KO:K07565OMA:VVKAHVG
Pfam:PF03657Pfscan:PS50890PhylomeDB:Q6NM52PIRSF:PIRSF017190
PROSITE:PS50890Proteomes:UP000006548RefSeq:NP_193312.5SMART:SM00359
SMR:Q6NM52STRING:3702.AT4G15770.1SUPFAM:SSF88697SUPFAM:SSF88802
TAIR:AT4G15770UniGene:At.33143UniProt:Q6NM52
Coordinates (TAIR10) chr4:+:8978060..8978623
Molecular Weight (calculated) 20611.80 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.15
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPLDETETT VVFEKLFKFV GNNLKKIVEN PSDEGPESTP GSYCFRLQKN RVYYVSEALV KRATNISRKN LVSFGTCIGK YTHAGSFHLT IMSLNILAAN
101: AKHKVWLKPT SEMSFLYGNH VLKGGLGRIT DSIVPGDGVV VFSMSDVPLG FGIAAKSTQD CRKLDPNGIV VLHQADIGEY LRGEDDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)