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AT4G15660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.875
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G15670.1); Has 1520 Blast hits to 1515 proteins in 222 species: Archae - 0; Bacteria - 20; Metazoa - 424; Fungi - 241; Plants - 751; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0695eggNOG:KOG1752EMBL:AL161542EMBL:BT012516
EMBL:BT015097EMBL:CP002687EMBL:FJ611915EMBL:Z97339
EnsemblPlants:AT4G15660EnsemblPlants:AT4G15660.1entrez:827243Gene3D:3.40.30.10
GeneID:827243Genevisible:O23417GO:GO:0005634GO:GO:0005737
GO:GO:0009055GO:GO:0015035GO:GO:0045454GO:GO:0046872
GO:GO:0051537Gramene:AT4G15660.1hmmpanther:PTHR10168hmmpanther:PTHR10168:SF115
HOGENOM:HOG000095204InParanoid:O23417InterPro:IPR002109InterPro:IPR011905
InterPro:IPR012336InterPro:IPR014025KEGG:ath:AT4G15660OMA:PNGMEME
PaxDb:O23417Pfam:O23417Pfam:PF00462Pfscan:PS51354
PhylomeDB:O23417PIR:F71421PRINTS:PR00160PRO:PR:O23417
PROSITE:PS51354ProteinModelPortal:O23417Proteomes:UP000006548RefSeq:NP_193301.1
SMR:O23417STRING:3702.AT4G15660.1SUPFAM:SSF52833TAIR:AT4G15660
TIGRfam:TIGR02189TIGRFAMs:TIGR02189UniGene:At.33156UniProt:O23417
Coordinates (TAIR10) chr4:+:8925928..8926236
Molecular Weight (calculated) 11312.10 Da
IEP (calculated) 8.06
GRAVY (calculated) 0.30
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKIQKMISE KSVVIFSNNS CCMSHTIKTL FLDLGVNPTI YELDEINRGK EIEYALAQLG CSPTVPVVFI GGQLVGGANQ VMSLHLNRSL IPMLKRFGAL
101: WL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)