suba logo
AT4G15560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24124904 (2013): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Deoxyxylulose-5-phosphate synthase
Curator
Summary (TAIR10)
Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis
Computational
Description (TAIR10)
CLOROPLASTOS ALTERADOS 1 (CLA1); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826), Transketolase-like, C-terminal (InterPro:IPR015941), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 1-deoxy-D-xylulose 5-phosphate synthase 1 (TAIR:AT3G21500.2); Has 24450 Blast hits to 24392 proteins in 2940 species: Archae - 267; Bacteria - 15281; Metazoa - 526; Fungi - 278; Plants - 446; Viruses - 0; Other Eukaryotes - 7652 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G15560-MONOMERBioCyc:MetaCyc:AT4G15560-MONOMERBioGrid:12527BRENDA:2.2.1.7
ChEMBL:CHEMBL2285355EC:2.2.1.7eggNOG:COG1154eggNOG:ENOG410IT57
EMBL:AL161542EMBL:BT002340EMBL:CP002687EMBL:U27099
EMBL:Y14333EMBL:Z97339EnsemblPlants:AT4G15560EnsemblPlants:AT4G15560.1
entrez:827230Gene3D:3.40.50.920Gene3D:3.40.50.970GeneID:827230
Genevisible:Q38854GO:GO:0008661GO:GO:0009228GO:GO:0009507
GO:GO:0009570GO:GO:0015995GO:GO:0016114GO:GO:0019288
GO:GO:0046872GO:GO:0052865Gramene:AT4G15560.1gramene_pathway:2.2.1.7
gramene_pathway:NONMEVIPP-PWYgramene_plant_reactome:1119464gramene_plant_reactome:1119594gramene_plant_reactome:6876271
gramene_plant_reactome:6877099HAMAP:MF_00315hmmpanther:PTHR11624hmmpanther:PTHR11624:SF83
HOGENOM:HOG000012988InParanoid:Q38854IntAct:Q38854InterPro:IPR005474
InterPro:IPR005475InterPro:IPR005477InterPro:IPR009014InterPro:IPR020826
InterPro:IPR029061InterPro:IPR033247InterPro:IPR033248iPTMnet:Q38854
KEGG:00730+2.2.1.7KEGG:00900+2.2.1.7KEGG:ath:AT4G15560KO:K01662
OMA:GRRGKMPPANTHER:PTHR11624PaxDb:Q38854Pfam:PF02779
Pfam:PF02780Pfam:PF13292Pfam:Q38854PhylomeDB:Q38854
PIR:H85171PIR:T52289PRIDE:Q38854PRO:PR:Q38854
PROSITE:PS00801PROSITE:PS00802ProteinModelPortal:Q38854Proteomes:UP000006548
RefSeq:NP_193291.1scanprosite:PS00801scanprosite:PS00802SMART:SM00861
SMR:Q38854STRING:3702.AT4G15560.1SUPFAM:SSF52518SUPFAM:SSF52922
TAIR:AT4G15560tair10-symbols:CLAtair10-symbols:CLA1tair10-symbols:DEF
tair10-symbols:DXPS2tair10-symbols:DXSTIGRfam:TIGR00204TIGRFAMs:TIGR00204
UniGene:At.23240UniPathway:UPA00064UniProt:Q38854
Coordinates (TAIR10) chr4:+:8884218..8887254
Molecular Weight (calculated) 76837.30 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.10
Length 717 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)