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AT4G15545.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22182420 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12525eggNOG:ENOG410IGB4eggNOG:ENOG4111Y4KEMBL:AL161541
EMBL:AY039512EMBL:AY057513EMBL:AY057742EMBL:AY087027
EMBL:AY136431EMBL:BT000212EMBL:CP002687EMBL:Z97339
EnsemblPlants:AT4G15545EnsemblPlants:AT4G15545.1entrez:827228GeneID:827228
Genevisible:Q93W28GO:GO:0016021GO:GO:0022857Gramene:AT4G15545.1
hmmpanther:PTHR31218hmmpanther:PTHR31218:SF43HOGENOM:HOG000005702IntAct:Q93W28
InterPro:IPR030184iPTMnet:Q93W28KEGG:ath:AT4G15545ncoils:Coil
OMA:FATTRGMPANTHER:PTHR31218PaxDb:Q93W28Pfam:Q93W28
PhylomeDB:Q93W28PIR:B71420PRIDE:Q93W28PRO:PR:Q93W28
ProteinModelPortal:Q93W28Proteomes:UP000006548RefSeq:NP_567470.1STRING:3702.AT4G15545.1
TAIR:AT4G15545UniGene:At.23338UniGene:At.63697UniProt:Q93W28
Coordinates (TAIR10) chr4:+:8875932..8877567
Molecular Weight (calculated) 37208.10 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.69
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)