AT4G15530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 plastid 0.500 ASURE: cytosol,plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pyruvate orthophosphate dikinase | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pyruvate orthophosphate dikinase (PPDK); FUNCTIONS IN: kinase activity, pyruvate, phosphate dikinase activity; INVOLVED IN: phosphorylation, response to absence of light; LOCATED IN: cytosol, nucleus, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PEP-utilising enzyme, mobile domain (InterPro:IPR008279), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Pyruvate, phosphate dikinase (InterPro:IPR010121), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), PEP-utilising enzyme (InterPro:IPR000121); Has 15301 Blast hits to 15212 proteins in 2599 species: Archae - 294; Bacteria - 9981; Metazoa - 12; Fungi - 19; Plants - 160; Viruses - 0; Other Eukaryotes - 4835 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8864828..8870727 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104211.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.07 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 956 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSMIVKTTP ELFKGNGVFR TDHLGENRMV SRSNRLGDGS NRFPRTGTIH CQRLSIAKTG LHRETKARAI LSPVSDPAAS IAQKRVFTFG KGRSEGNKGM 101: KSLLGGKGAN LAEMASIGLS VPPGLTISTE ACQQYQIAGK KLPEGLWEEI LEGLSFIERD IGASLADPSK PLLLSVRSGA AISMPGMMDT VLNLGLNDQV 201: VVGLAAKSGE RFAYDSFRRF LDMFGDVVMG IPHAKFEEKL ERMKERKGVK NDTDLSAADL KELVEQYKSV YLEAKGQEFP SDPKKQLELA IEAVFDSWDS 301: PRANKYRSIN QITGLKGTAV NIQCMVFGNM GDTSGTGVLF TRNPSTGEKK LYGEFLVNAQ GEDVVAGIRT PEDLDTMKRF MPEAYAELVE NCNILERHYK 401: DMMDIEFTVQ EERLWMLQCR AGKRTGKGAV KIAVDMVGEG LVEKSSAIKM VEPQHLDQLL HPQFHDPSGY REKVVAKGLP ASPGAAVGQV VFTAEEAEAW 501: HSQGKTVILV RTETSPDDVG GMHAAEGILT ARGGMTSHAA VVARGWGKCC IAGCSEIRVD ENHKVLLIGD LTINEGEWIS MNGSTGEVIL GKQALAPPAL 601: SPDLETFMSW ADAIRRLKVM ANADTPEDAI AARKNGAQGI GLCRTEHMFF GADRIKAVRK MIMAVTTEQR KASLDILLPY QRSDFEGIFR AMDGLPVTIR 701: LLDPPLHEFL PEGDLDNIVH ELAEETGVKE DEVLSRIEKL SEVNPMLGFR GCRLGISYPE LTEMQARAIF EAAASMQDQG VTVIPEIMVP LVGTPQELGH 801: QVDVIRKVAK KVFAEKGHTV SYKVGTMIEI PRAALIADEI AKEAEFFSFG TNDLTQMTFG YSRDDVGKFL PIYLAKGILQ HDPFEVLDQQ GVGQLIKMAT 901: EKGRAARPSL KVGICGEHGG DPSSVGFFAE AGLDYVSCSP FRVPIARLAA AQVVVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)